fix a bunch of broken linke or make links unique across files (df20fbbc) · Commits · 郑智淋 / lammps

doc/src/Commands_bond.txt

+1 −1

Original line number	Diff line number	Diff line
		@@ -9,7 +9,7 @@ Documentation"_ld - "LAMMPS Commands"_lc :c
		"Fix styles"_Commands_fix.html,
		"Compute styles"_Commands_compute.html,
		"Pair styles"_Commands_pair.html,
		"Bond styles"_Commands_bond.html,
		"Bond styles"_Commands_bond.html#bond,
		"Angle styles"_Commands_bond.html#angle,
		"Dihedral styles"_Commands_bond.html#dihedral,
		"Improper styles"_Commands_bond.html#improper,

+2 −2

Original line number	Diff line number	Diff line
		@@ -31,7 +31,7 @@ using the "fix shake"_fix_shake.html command.

		These are the additional parameters (in real units) to set for O and H
		atoms and the water molecule to run a rigid TIP4P model with a cutoff
		"(Jorgensen)"_#Jorgensen1. Note that the OM distance is specified in
		"(Jorgensen)"_#Jorgensen5. Note that the OM distance is specified in
		the "pair_style"_pair_style.html command, not as part of the pair
		coefficients.

		@@ -107,6 +107,6 @@ models"_http://en.wikipedia.org/wiki/Water_model.

		:line

		:link(Jorgensen1)
		:link(Jorgensen5)
		[(Jorgensen)] Jorgensen, Chandrasekhar, Madura, Impey, Klein, J Chem
		Phys, 79, 926 (1983).

+2 −2

Original line number	Diff line number	Diff line
		@@ -20,7 +20,7 @@ classes of functionality:
		"Integrators"_#integrate
		"Diagnostics"_#diag
		"Output"_#output
		"Multi-replica models"_#replica
		"Multi-replica models"_#replica1
		"Pre- and post-processing"_#prepost
		"Specialized features (beyond MD itself)"_#special :ul

		@@ -154,7 +154,7 @@ Output :h4,link(output)
		time averaging of system-wide quantities
		atom snapshots in native, XYZ, XTC, DCD, CFG formats :ul

		Multi-replica models :h4,link(replica)
		Multi-replica models :h4,link(replica1)

		"nudged elastic band"_neb.html
		"parallel replica dynamics"_prd.html

+4 −2

Original line number	Diff line number	Diff line
		@@ -8,6 +8,8 @@

		<BODY>

		<H1></H1>

		<!-- END_HTML_ONLY -->

		"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c
		@@ -18,8 +20,6 @@

		:line

		<H1></H1>

		LAMMPS Documentation :c,h1
		2 Aug 2018 version :c,h2

		@@ -71,6 +71,7 @@ every LAMMPS command.
		:name: userdoc
		:includehidden:

		Manual_version
		Intro
		Section_start
		Commands
		@@ -82,6 +83,7 @@ every LAMMPS command.
		Modify
		Python
		Errors
		Build_manual

		.. toctree::
		:caption: Index

+4 −4

Original line number	Diff line number	Diff line
		@@ -49,7 +49,7 @@ as contained in the file name.
		"PYTHON"_#PYTHON,
		"QEQ"_#QEQ,
		"REAX"_#REAX,
		"REPLICA"_#REPLICA,
		"REPLICA"_#REPLICA2,
		"RIGID"_#RIGID,
		"SHOCK"_#SHOCK,
		"SNAP"_#SNAP,
		@@ -392,7 +392,7 @@ src/GPU: filenames -> commands
		src/GPU/README
		lib/gpu/README
		"Speed packages"_Speed_packages.html
		"Speed gpu"_Speed_gpu.html.html
		"Speed gpu"_Speed_gpu.html
		"Section 2.6 -sf gpu"_Section_start.html#start_6
		"Section 2.6 -pk gpu"_Section_start.html#start_6
		"package gpu"_package.html
		@@ -1225,7 +1225,7 @@ examples/reax :ul

		:line

		REPLICA package :link(REPLICA),h4
		REPLICA package :link(REPLICA2),h4

		[Contents:]

		@@ -1373,7 +1373,7 @@ make machine :pre
		[Supporting info:]

		src/SPIN: filenames -> commands
		"Howto spin"_Howto_spin.html
		"Howto spins"_Howto_spins.html
		"pair_style spin/dmi"_pair_spin_dmi.html
		"pair_style spin/exchange"_pair_spin_exchange.html
		"pair_style spin/magelec"_pair_spin_magelec.html