Commit d5514c31 authored by sjplimp's avatar sjplimp
Browse files

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@1385 f3b2605a-c512-4ea7-a41b-209d697bcdaa
parent 5d3b037c
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@@ -501,7 +501,7 @@ other variables = v_a, v_myvar, ...
math functions = div(x,y), mult(x,y), add(x,y), ...
group functions = mass(group), xcm(group,x), ...
atom values = x<B>123</B>, y<B>3</B>, vx<B>34</B>, ...
compute values = c_mytemp<B>0</B>, c_thermo_pressure<B>3</B>, ...
compute values = c_mytemp<B>0</B>, c_thermo_press<B>3</B>, ...
</P>
<P>Adding keywords for the <A HREF = "themo_style.html">thermo_style custom</A> command
(which can then be accessed by variables) was discussed
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@@ -478,7 +478,7 @@ other variables = v_a, v_myvar, ...
math functions = div(x,y), mult(x,y), add(x,y), ...
group functions = mass(group), xcm(group,x), ...
atom values = x[123], y[3], vx[34], ...
compute values = c_mytemp[0], c_thermo_pressure[3], ...
compute values = c_mytemp[0], c_thermo_press[3], ...

Adding keywords for the "thermo_style custom"_themo_style.html command
(which can then be accessed by variables) was discussed
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@@ -186,15 +186,15 @@ the KSPACE package (see below).
</P>
<P>(7) There are a few other -D compiler switches you can set as part of
CCFLAGS.  The read_data and dump commands will read/write gzipped
files if you compile with -DGZIP.  It requires that your Unix support
the "popen" command.  Using one of the -DPACK_ARRAY, -DPACK_POINTER,
and -DPACK_MEMCPY options can make for faster parallel FFTs (in the
PPPM solver) on some platforms.  The -DPACK_ARRAY setting is the
default.  If you compile with -DLAMMPS_XDR, the build will include XDR
compatability files for doing particle dumps in XTC format.  This is
only necessary if your platform does have its own XDR files available.
See the Restrictions section of the <A HREF = "dump.html">dump</A> command for
details.
files if you compile with -DLAMMPS_GZIP.  It requires that your Unix
support the "popen" command.  Using one of the -DPACK_ARRAY,
-DPACK_POINTER, and -DPACK_MEMCPY options can make for faster parallel
FFTs (in the PPPM solver) on some platforms.  The -DPACK_ARRAY setting
is the default.  If you compile with -DLAMMPS_XDR, the build will
include XDR compatability files for doing particle dumps in XTC
format.  This is only necessary if your platform does have its own XDR
files available.  See the Restrictions section of the <A HREF = "dump.html">dump</A>
command for details.
</P>
<P>(8) The DEPFLAGS setting is how the C++ compiler creates a dependency
file for each source file.  This speeds re-compilation when source
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@@ -181,15 +181,15 @@ the KSPACE package (see below).

(7) There are a few other -D compiler switches you can set as part of
CCFLAGS.  The read_data and dump commands will read/write gzipped
files if you compile with -DGZIP.  It requires that your Unix support
the "popen" command.  Using one of the -DPACK_ARRAY, -DPACK_POINTER,
and -DPACK_MEMCPY options can make for faster parallel FFTs (in the
PPPM solver) on some platforms.  The -DPACK_ARRAY setting is the
default.  If you compile with -DLAMMPS_XDR, the build will include XDR
compatability files for doing particle dumps in XTC format.  This is
only necessary if your platform does have its own XDR files available.
See the Restrictions section of the "dump"_dump.html command for
details.
files if you compile with -DLAMMPS_GZIP.  It requires that your Unix
support the "popen" command.  Using one of the -DPACK_ARRAY,
-DPACK_POINTER, and -DPACK_MEMCPY options can make for faster parallel
FFTs (in the PPPM solver) on some platforms.  The -DPACK_ARRAY setting
is the default.  If you compile with -DLAMMPS_XDR, the build will
include XDR compatability files for doing particle dumps in XTC
format.  This is only necessary if your platform does have its own XDR
files available.  See the Restrictions section of the "dump"_dump.html
command for details.

(8) The DEPFLAGS setting is how the C++ compiler creates a dependency
file for each source file.  This speeds re-compilation when source
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@@ -76,11 +76,11 @@ computes for further info.
</P>
<P>LAMMPS creates its own global computes for thermodynamic output.
Three computes are always created, named "thermo_temp",
"thermo_pressure", and "thermo_pe", as if these commands had been
invoked in the input script:
"thermo_press", and "thermo_pe", as if these commands had been invoked
in the input script:
</P>
<PRE>compute thermo_temp all temp
compute thermo_pressure all pressure thermo_temp
compute thermo_press all pressure thermo_temp
compute thermo_pe all pe 
</PRE>
<P>Additional computes for other quantities are created if the thermo
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