Commit cfc1b3a8 authored by Steven J. Plimpton's avatar Steven J. Plimpton
Browse files

more changes induced by removing Section_start.txt

parent c97e6537
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@@ -58,9 +58,9 @@ style", with ... being fix, compute, pair, etc, it means that you
mistyped the style name or that the command is part of an optional
package which was not compiled into your executable.  The list of
available styles in your executable can be listed by using "the -h
command-line argument"_Section_start.html#start_6.  The installation
and compilation of optional packages is explained in the "installation
instructions"_Section_start.html#start_3.
command-line swith"_Run_options.html.  The installation and
compilation of optional packages is explained on the "Build
packages"_Build_packages.html doc page.

For a given command, LAMMPS expects certain arguments in a specified
order.  If you mess this up, LAMMPS will often flag the error, but it
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@@ -7911,8 +7911,8 @@ Atom IDs must be positive integers. :dd
{One or more atom IDs is too big} :dt

The limit on atom IDs is set by the SMALLBIG, BIGBIG, SMALLSMALL
setting in your Makefile.  See Section_start 2.2 of the manual for
more details. :dd
setting in your LAMMPS build.  See the "Build
settings"_Build_settings.html doc page for more info. :dd

{One or more atom IDs is zero} :dt

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@@ -112,10 +112,10 @@ web site.

If you uncomment the "dump image"_dump_image.html line(s) in the input
script a series of JPG images will be produced by the run (assuming
you built LAMMPS with JPG support; see "Section
2.2"_Section_start.html#start_2 for details).  These can be viewed
individually or turned into a movie or animated by tools like
ImageMagick or QuickTime or various Windows-based tools.  See the
you built LAMMPS with JPG support; see the
"Build_settings"_Build_settings.html doc page for details).  These can
be viewed individually or turned into a movie or animated by tools
like ImageMagick or QuickTime or various Windows-based tools.  See the
"dump image"_dump_image.html doc page for more details.  E.g. this
Imagemagick command would create a GIF file suitable for viewing in a
browser.
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@@ -84,7 +84,7 @@ END_RST -->

"Using GitHub with LAMMPS"_Howto_github.html
"PyLAMMPS interface to LAMMPS"_Howto_pylammps.html
"Using LAMMPS with bash on Windows"_Howto_bash.html
"Using LAMMPS with bash on Windows"_Howto_bash.html :all(b)

"Restart a simulation"_Howto_restart.html
"Visualize LAMMPS snapshots"_Howto_viz.html
@@ -121,8 +121,8 @@ END_RST -->
"Polarizable models"_Howto_polarizable.html
"Adiabatic core/shell model"_Howto_coreshell.html
"Drude induced dipoles"_Howto_drude.html
"Drude induced dipoles (extended)"_Howto_drude2.html :all(b)
"Drude induced dipoles (extended)"_Howto_drude2.html
"Manifolds (surfaces)"_Howto_manifold.html
"Magnetic spins"_Howto_spins.html
"Magnetic spins"_Howto_spins.html :all(b)

<!-- END_HTML_ONLY -->
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@@ -77,17 +77,16 @@ strain induced across grain boundaries :l
:link(quest,http://dft.sandia.gov/Quest)
:link(spparks,http://www.sandia.gov/~sjplimp/spparks.html)

"This section"_Section_start.html#start_5 of the documentation
describes how to build LAMMPS as a library.  Once this is done, you
can interface with LAMMPS either via C++, C, Fortran, or Python (or
any other language that supports a vanilla C-like interface).  For
example, from C++ you could create one (or more) "instances" of
LAMMPS, pass it an input script to process, or execute individual
commands, all by invoking the correct class methods in LAMMPS.  From C
or Fortran you can make function calls to do the same things.  See the
"Python"_Python.html doc pages for a description of the Python wrapper
provided with LAMMPS that operates through the LAMMPS library
interface.
The "Build basics"_Build_basics.html doc page describes how to build
LAMMPS as a library.  Once this is done, you can interface with LAMMPS
either via C++, C, Fortran, or Python (or any other language that
supports a vanilla C-like interface).  For example, from C++ you could
create one (or more) "instances" of LAMMPS, pass it an input script to
process, or execute individual commands, all by invoking the correct
class methods in LAMMPS.  From C or Fortran you can make function
calls to do the same things.  See the "Python"_Python.html doc pages
for a description of the Python wrapper provided with LAMMPS that
operates through the LAMMPS library interface.

The files src/library.cpp and library.h contain the C-style interface
to LAMMPS.  See the "Howto library"_Howto_library.html doc page for a
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