Some more code-blocks instead of parsed-literal

LAMMPS as either a shared or static library.  This results in one of

these 2 files:

.. parsed-literal::

.. code-block:: bash

   liblammps.so      # shared library

   liblammps.a       # static library

use Makefile.serial and Makefile.mpi, respectively.  Other makefiles

are in these directories:

.. parsed-literal::

.. code-block:: bash

   OPTIONS      # Makefiles which enable specific options

   MACHINES     # Makefiles for specific machines

Here is how you can run and visualize one of the sample problems:

.. parsed-literal::

.. code-block:: bash

   cd indent

   cp ../../src/lmp_linux .           # copy LAMMPS executable to this dir

Imagemagick command would create a GIF file suitable for viewing in a

browser.

.. parsed-literal::

.. code-block:: bash

   % convert -loop 1 \*.jpg foo.gif

   % convert -loop 1 *.jpg foo.gif

----------

USER-DRUDE package) to convert a non-polarizable data file (here

*data.102494.lmp*\ ) to a polarizable data file (\ *data-p.lmp*\ )

.. parsed-literal::

.. code-block:: bash

   polarizer -q -f phenol.dff data.102494.lmp data-p.lmp

to 6 sub-directories, 2 Nroff files, and optionally 2 PDF files

plus 2 e-book format files:

.. parsed-literal::

.. code-block:: bash

   src             # content files for LAMMPS documentation

   html            # HTML version of the LAMMPS manual (see html/Manual.html)