Commit c3de3c14 authored by Axel Kohlmeyer's avatar Axel Kohlmeyer
Browse files

correct references to Howto subsections

parent 80f94c7d

doc/html/Section_python.html

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@@ -184,7 +184,7 @@ visualization package, or to run a coupled multiscale or multiphysics 
model.</p>

<p>See <a class="reference internal" href="Section_howto.html#howto-10"><span class="std std-ref">Section 6.10</span></a> of the manual and

the couple directory of the distribution for more ideas about coupling

LAMMPS to other codes.  See <a class="reference internal" href="Section_howto.html#howto-19"><span class="std std-ref">Section_howto 19</span></a> for a description of the LAMMPS

LAMMPS to other codes.  See <a class="reference internal" href="Section_howto.html#howto-19"><span class="std std-ref">Section 6.19</span></a> for a description of the LAMMPS

library interface provided in src/library.cpp and src/library.h, and

how to extend it for your needs.  As described below, that interface

is what is exposed to Python either when calling LAMMPS from Python or

doc/html/Section_start.html

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@@ -1258,7 +1258,7 @@ manual. See <a class="reference internal" href="Section_python.html"><span clas 
description of the Python wrapper provided with LAMMPS that operates

through the LAMMPS library interface.</p>

<p>The files src/library.cpp and library.h define the C-style API for

using LAMMPS as a library.  See <a class="reference internal" href="Section_howto.html#howto-19"><span class="std std-ref">Section_howto 19</span></a> of the manual for a description of the

using LAMMPS as a library.  See <a class="reference internal" href="Section_howto.html#howto-19"><span class="std std-ref">Section 6.19</span></a> of the manual for a description of the

interface and how to extend it for your needs.</p>

<hr class="docutils" />

</div>

doc/html/atom_style.html

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@@ -283,7 +283,7 @@ output the custom values.</p> 
</div>

<p>All of the above styles define point particles, except the <em>sphere</em>,

<em>ellipsoid</em>, <em>electron</em>, <em>peri</em>, <em>wavepacket</em>, <em>line</em>, <em>tri</em>, and

<em>body</em> styles, which define finite-size particles.  See <a class="reference internal" href="Section_howto.html#howto-14"><span class="std std-ref">Section_howto 14</span></a> for an overview of using finite-size

<em>body</em> styles, which define finite-size particles.  See <a class="reference internal" href="Section_howto.html#howto-14"><span class="std std-ref">Section 6.14</span></a> for an overview of using finite-size

particle models with LAMMPS.</p>

<p>All of the point-particle styles assign mass to particles on a

per-type basis, using the <a class="reference internal" href="mass.html"><span class="doc">mass</span></a> command, The finite-size

doc/html/compute_angmom_chunk.html

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@@ -150,7 +150,7 @@ chunks of atoms.</p> 
<p>In LAMMPS, chunks are collections of atoms defined by a <a class="reference internal" href="compute_chunk_atom.html"><span class="doc">compute chunk/atom</span></a> command, which assigns each atom

to a single chunk (or no chunk).  The ID for this command is specified

as chunkID.  For example, a single chunk could be the atoms in a

molecule or atoms in a spatial bin.  See the <a class="reference internal" href="compute_chunk_atom.html"><span class="doc">compute chunk/atom</span></a> doc page and &#8220;<a class="reference internal" href="Section_howto.html#howto-23"><span class="std std-ref">Section_howto 23</span></a> for details of how chunks can be

molecule or atoms in a spatial bin.  See the <a class="reference internal" href="compute_chunk_atom.html"><span class="doc">compute chunk/atom</span></a> doc page and <a class="reference internal" href="Section_howto.html#howto-23"><span class="std std-ref">Section 6.23</span></a> for details of how chunks can be

defined and examples of how they can be used to measure properties of

a system.</p>

<p>This compute calculates the 3 components of the angular momentum
@@ -188,7 +188,7 @@ fix 1 all ave/time 100 1 100 c_myChunk[*] file tmp.out mode vector 
number of chunks <em>Nchunk</em> as calculated by the specified <a class="reference internal" href="compute_chunk_atom.html"><span class="doc">compute chunk/atom</span></a> command.  The number of columns =

3 for the 3 xyz components of the angular momentum for each chunk.

These values can be accessed by any command that uses global array

values from a compute as input.  See <a class="reference internal" href="Section_howto.html#howto-15"><span class="std std-ref">Section_howto 15</span></a> for an overview of LAMMPS output

values from a compute as input.  See <a class="reference internal" href="Section_howto.html#howto-15"><span class="std std-ref">Section 6.15</span></a> for an overview of LAMMPS output

options.</p>

<p>The array values are &#8220;intensive&#8221;.  The array values will be in

mass-velocity-distance <a class="reference internal" href="units.html"><span class="doc">units</span></a>.</p>

doc/html/compute_basal_atom.html

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@@ -163,7 +163,7 @@ in examples/USER/misc/basal.</p> 
<p><strong>Output info:</strong></p>

<p>This compute calculates a per-atom array with 3 columns, which can be

accessed by indices 1-3 by any command that uses per-atom values from

a compute as input.  See <a class="reference internal" href="Section_howto.html#howto-15"><span class="std std-ref">Section_howto 15</span></a> for an overview of LAMMPS output

a compute as input.  See <a class="reference internal" href="Section_howto.html#howto-15"><span class="std std-ref">Section 6.15</span></a> for an overview of LAMMPS output

options.</p>

<p>The per-atom vector values are unitless since the 3 columns represent

components of a unit vector.</p>

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