make horizontally aligned image formatting consistent and display "click on"... (c21ce0b2) · Commits · 郑智淋 / lammps

doc/src/Python_examples.rst

+16 −9

Original line number	Diff line number	Diff line
		@@ -80,16 +80,23 @@ See the python/README file for instructions on how to run them and the
		source code for individual scripts for comments about what they do.

		Here are screenshots of the vizplotgui_tool.py script in action for
		different visualization package options. Click to see larger images:
		different visualization package options:

		.. image:: img/screenshot_gl.jpg
		:scale: 15%
		.. \|pyex1\| image:: img/screenshot_gl.jpg
		:width: 24%

		.. image:: img/screenshot_atomeye.jpg
		:scale: 15%
		.. \|pyex2\| image:: img/screenshot_atomeye.jpg
		:width: 24%

		.. image:: img/screenshot_pymol.jpg
		:scale: 15%
		.. \|pyex3\| image:: img/screenshot_pymol.jpg
		:width: 24%

		.. \|pyex4\| image:: img/screenshot_vmd.jpg
		:width: 24%

		\|pyex1\| \|pyex2\| \|pyex3\| \|pyex4\|

		.. raw:: html

		Click to see larger versions of the images.

		.. image:: img/screenshot_vmd.jpg
		:scale: 15%

+7 −7

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		@@ -177,16 +177,16 @@ volume (area in 2d) assigned to each processor, as in the following 2d
		diagram where processor sub-domains are shown and particles are
		colored by the processor that owns them.

		.. list-table::
		.. \|balance1\| image:: img/balance_uniform.jpg
		:width: 32%

		* - .. figure:: img/balance_uniform.jpg
		:scale: 50%
		.. \|balance2\| image:: img/balance_nonuniform.jpg
		:width: 32%

		- .. figure:: img/balance_nonuniform.jpg
		:scale: 50%
		.. \|balance3\| image:: img/balance_rcb.jpg
		:width: 32%

		- .. figure:: img/balance_rcb.jpg
		:scale: 50%
		\|balance1\| \|balance2\| \|balance3\|

		The leftmost diagram is the default partitioning of the simulation box
		across processors (one sub-box for each of 16 processors); the middle

+5 −2

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		@@ -257,8 +257,7 @@ individual lattice points being "above" or "below" the mathematical
		expression for the sinusoidal curve. If a finer lattice were used,
		the sinusoid would appear to be "smoother". Also note the use of the
		"xlat" and "ylat" :doc:`thermo_style <thermo_style>` keywords which
		converts lattice spacings to distance. Click on the image for a
		larger version.
		converts lattice spacings to distance.

		.. code-block:: LAMMPS

		@@ -279,6 +278,10 @@ larger version.
		:scale: 50%
		:align: center

		.. raw:: html

		Click on the image for a larger version.

		The rotate keyword allows specification of the orientation
		at which molecules are inserted. The axis of rotation is
		determined by the rotation vector (Rx,Ry,Rz) that goes through the

+6 −6

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		@@ -116,17 +116,17 @@ script to generate the images/movie.

		Here are two sample images, rendered as 1024x1024 JPEG files.

		.. raw:: html

		Click to see the full-size images:

		.. \|dump1\| image:: img/dump1.jpg
		:scale: 48%
		:width: 48%
		.. \|dump2\| image:: img/dump2.jpg
		:scale: 48%
		:width: 48%

		\|dump1\| \|dump2\|

		.. raw:: html

		Click to see the full-size images:

		Only atoms in the specified group are rendered in the image. The
		:doc:`dump_modify region and thresh <dump_modify>` commands can also
		alter what atoms are included in the image.

+7 −7

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		@@ -156,16 +156,16 @@ assigned to each processor, as in the following 2d diagram where
		processor sub-domains are shown and atoms are colored by the processor
		that owns them.

		.. list-table::
		.. \|balance1\| image:: img/balance_uniform.jpg
		:width: 32%

		* - .. figure:: img/balance_uniform.jpg
		:scale: 50%
		.. \|balance2\| image:: img/balance_nonuniform.jpg
		:width: 32%

		- .. figure:: img/balance_nonuniform.jpg
		:scale: 50%
		.. \|balance3\| image:: img/balance_rcb.jpg
		:width: 32%

		- .. figure:: img/balance_rcb.jpg
		:scale: 50%
		\|balance1\| \|balance2\| \|balance3\|

		The leftmost diagram is the default partitioning of the simulation box
		across processors (one sub-box for each of 16 processors); the middle