peptide:  dynamics of a small solvated peptide chain (5-mer)

peri:	  Peridynamic model of cylinder impacted by indenter

pour:     pouring of granular particles into a 3d box, then chute flow

prd:      parallel replica dynamics of a vacancy diffusion in bulk Si

prd:      parallel replica dynamics of vacancy diffusion in bulk Si

reax:     RDX and TATB models using the ReaxFF

rigid:    rigid bodies modeled as independent or coupled

shear:    sideways shear applied to 2d solid, with and without a void

srd:      stochastic rotation dynamics (SRD) particles as solvent

tad:      temperature-accelerated dynamics of vacancy diffusion in bulk Si

Here is how you might run and visualize one of the sample problems: