correct and improve links to PyMol and MATLAB (b698f389) · Commits · 郑智淋 / lammps

doc/src/Section_intro.txt

+1 −1

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		@@ -347,7 +347,7 @@ following packages:

		"VMD"_http://www.ks.uiuc.edu/Research/vmd
		"AtomEye"_http://mt.seas.upenn.edu/Archive/Graphics/A
		"PyMol"_http://pymol.sourceforge.net
		"PyMol"_http://www.pymol.org
		"Raster3d"_http://www.bmsc.washington.edu/raster3d/raster3d.html
		"RasMol"_http://www.openrasmol.org :ul

+2 −2

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		@@ -790,13 +790,13 @@ capability needed by these Python scripts.

		Note that for PyMol, you need to have built and installed the
		open-source version of PyMol in your Python, so that you can import it
		from a Python script. See the PyMol WWW pages "here"_pymol or
		from a Python script. See the PyMol WWW pages "here"_pymolhome or
		"here"_pymolopen for more details:

		http://www.pymol.org
		http://sourceforge.net/scm/?type=svn&group_id=4546 :pre

		:link(pymol,http://www.pymol.org)
		:link(pymolhome,http://www.pymol.org)
		:link(pymolopen,http://sourceforge.net/scm/?type=svn&group_id=4546)

		The latter link is to the open-source version.

+5 −4

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		@@ -330,7 +330,7 @@ Kohlmeyer (akohlmey at cmm.chem.upenn.edu) at U Penn.

		matlab tool :h4,link(matlab)

		The matlab sub-directory contains several "MATLAB"_matlab scripts for
		The matlab sub-directory contains several "MATLAB"_matlabhome scripts for
		post-processing LAMMPS output. The scripts include readers for log
		and dump files, a reader for EAM potential files, and a converter that
		reads LAMMPS dump files and produces CFG files that can be visualized
		@@ -342,7 +342,7 @@ See the README.pdf file for more information.
		These scripts were written by Arun Subramaniyan at Purdue Univ
		(asubrama at purdue.edu).

		:link(matlab,http://www.mathworks.com)
		:link(matlabhome,http://www.mathworks.com)

		:line

		@@ -427,9 +427,10 @@ pymol_asphere tool :h4,link(pymol)
		The pymol_asphere sub-directory contains a tool for converting a
		LAMMPS dump file that contains orientation info for ellipsoidal
		particles into an input file for the "PyMol visualization
		package"_pymol.
		package"_pymolhome or its "open source variant"_pymolopen.

		:link(pymol,http://pymol.sourceforge.net)
		:link(pymolhome,http://www.pymol.org)
		:link(pymolopen,http://sourceforge.net/scm/?type=svn&group_id=4546)

		Specifically, the tool triangulates the ellipsoids so they can be
		viewed as true ellipsoidal particles within PyMol. See the README and