"PERI"_#PERI, Peridynamics models, Mike Parks (Sandia), "pair_style peri"_pair_peri.html, peri, -

"POEMS"_#POEMS, coupled rigid body motion, Rudra Mukherjee (JPL), "fix poems"_fix_poems.html, rigid, lib/poems

"PYTHON"_#PYTHON, embed Python code in an input script, -, "python"_python.html, python, lib/python

"REAX"_#REAX, ReaxFF potential, Aidan Thompson (Sandia), "pair_style reax"_pair_reax.html, reax, lib/reax

"REPLICA"_#REPLICA, multi-replica methods, -, "Section 6.6.5"_Section_howto.html#howto_5, tad, -

"RIGID"_#RIGID, rigid bodies, -, "fix rigid"_fix_rigid.html, rigid, -

"SHOCK"_#SHOCK, shock loading methods, -, "fix msst"_fix_msst.html, -, -

USER-CGDNA package :link(USER-CGDNA),h5

Contents: The CGDNA package implements coarse-grained force fields

for single- and double-stranded DNA. This is at the moment mainly

the oxDNA model, developed by Doye, Louis and Ouldridge at the 

University of Oxford. 

The package also contains Langevin-type rigid-body integrators

with improved stability.

Contents: The CGDNA package implements coarse-grained force fields for

single- and double-stranded DNA. This is at the moment mainly the

oxDNA model, developed by Doye, Louis and Ouldridge at the University

of Oxford.  The package also contains Langevin-type rigid-body

integrators with improved stability.

See these doc pages to get started:

"bond_style oxdna_fene"_bond_oxdna_fene.html

"pair_style oxdna_excv"_pair_oxdna_excv.html

"fix nve/dotc/langevin"_fix_nve_dotc_langevin.html :ul

"fix nve/dotc/langevin"_fix_nve_dotc_langevin.html

Supporting info: /src/USER-CGDNA/README, "bond_style oxdna_fene"_bond_oxdna_fene.html,

"pair_style oxdna_excv"_pair_oxdna_excv.html, "fix nve/dotc/langevin"_fix_nve_dotc_langevin.html

Supporting info: /src/USER-CGDNA/README, "bond_style

oxdna_fene"_bond_oxdna_fene.html, "pair_style

oxdna_excv"_pair_oxdna_excv.html, "fix

nve/dotc/langevin"_fix_nve_dotc_langevin.html

Author: Oliver Henrich at the University of Edinburgh, UK (o.henrich

at epcc.ed.ac.uk or ohenrich at ph.ed.ac.uk). Contact him directly 

if you have any questions. 

at epcc.ed.ac.uk or ohenrich at ph.ed.ac.uk).  Contact him directly if

you have any questions.

:line