Loading lib/kim/Install.py +17 −17 Original line number Diff line number Diff line Loading @@ -12,7 +12,7 @@ try: except: from urllib import urlretrieve as geturl except: def geturl(url,fname): cmd = "curl -o %s %s" % (fname,url) cmd = 'curl -L -o "%s" %s' % (fname,url) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) return txt Loading Loading @@ -139,7 +139,7 @@ if buildflag: if os.path.isdir(kimdir): print("kim-api is already installed at %s.\nRemoving it for re-install" % kimdir) cmd = "rm -rf %s" % kimdir cmd = 'rm -rf "%s"' % kimdir subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) # configure LAMMPS to use kim-api to be installed Loading @@ -160,48 +160,48 @@ if buildflag: print("Downloading kim-api tarball ...") geturl(url,"%s/%s.tgz" % (thisdir,version)) print("Unpacking kim-api tarball ...") cmd = "cd %s; rm -rf %s; tar zxvf %s.tgz" % (thisdir,version,version) cmd = 'cd "%s"; rm -rf "%s"; tar -xzvf %s.tgz' % (thisdir,version,version) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) # configure kim-api print("Configuring kim-api ...") cmd = "cd %s/%s; ./configure --prefix='%s'" % (thisdir,version,kimdir) cmd = 'cd "%s/%s"; ./configure --prefix="%s"' % (thisdir,version,kimdir) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) # build kim-api print("Configuring example Models") cmd = "cd %s/%s; make add-examples" % (thisdir,version) cmd = 'cd "%s/%s"; make add-examples' % (thisdir,version) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) if verboseflag: print (txt.decode("UTF-8")) if everythingflag: print("Configuring all OpenKIM models, this will take a while ...") cmd = "cd %s/%s; make add-OpenKIM" % (thisdir,version) cmd = 'cd "%s/%s"; make add-OpenKIM' % (thisdir,version) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) if verboseflag: print(txt.decode("UTF-8")) print("Building kim-api ...") cmd = "cd %s/%s; make" % (thisdir,version) cmd = 'cd "%s/%s"; make' % (thisdir,version) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) if verboseflag: print(txt.decode("UTF-8")) # install kim-api print("Installing kim-api ...") cmd = "cd %s/%s; make install" % (thisdir,version) cmd = 'cd "%s/%s"; make install' % (thisdir,version) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) if verboseflag: print(txt.decode("UTF-8")) cmd = "cd %s/%s; make install-set-default-to-v1" %(thisdir,version) cmd = 'cd "%s/%s"; make install-set-default-to-v1' %(thisdir,version) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) if verboseflag: print(txt.decode("UTF-8")) # remove source files print("Removing kim-api source and build files ...") cmd = "cd %s; rm -rf %s; rm -rf %s.tgz" % (thisdir,version,version) cmd = 'cd "%s"; rm -rf %s; rm -rf %s.tgz' % (thisdir,version,version) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) # add a single model (and possibly its driver) to existing KIM installation Loading @@ -219,11 +219,11 @@ if addflag: geturl(url,"%s/%s.tgz" % (thisdir,addmodelname)) print("Unpacking item tarball ...") cmd = "cd %s; tar zxvf %s.tgz" % (thisdir,addmodelname) cmd = 'cd "%s"; tar -xzvf %s.tgz' % (thisdir,addmodelname) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) print("Building item ...") cmd = "cd %s/%s; make; make install" %(thisdir,addmodelname) cmd = 'cd "%s/%s"; make; make install' %(thisdir,addmodelname) try: txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) except subprocess.CalledProcessError as e: Loading @@ -231,18 +231,18 @@ if addflag: # Error: but first, check to see if it needs a driver firstRunOutput = e.output.decode("UTF-8") cmd = "cd %s/%s; make kim-item-type" % (thisdir,addmodelname) cmd = 'cd "%s/%s"; make kim-item-type' % (thisdir,addmodelname) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) txt = txt.decode("UTF-8") if txt == "ParameterizedModel": # Get and install driver cmd = "cd %s/%s; make model-driver-name" % (thisdir,addmodelname) cmd = 'cd "%s/%s"; make model-driver-name' % (thisdir,addmodelname) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) adddrivername = txt.decode("UTF-8").strip() print("First installing model driver: %s..." % adddrivername) cmd = "cd %s; python Install.py -n -a %s" % (thisdir,adddrivername) cmd = 'cd "%s"; python Install.py -n -a %s' % (thisdir,adddrivername) try: txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) except subprocess.CalledProcessError as e: Loading @@ -254,7 +254,7 @@ if addflag: # now install the model that needed the driver print("Now installing model : %s" % addmodelname) cmd = "cd %s; python Install.py -n -a %s" % (thisdir,addmodelname) cmd = 'cd "%s"; python Install.py -n -a %s' % (thisdir,addmodelname) try: txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) except subprocess.CalledProcessError as e: Loading @@ -272,5 +272,5 @@ if addflag: if verboseflag: print(txt.decode("UTF-8")) print("Removing kim item source and build files ...") cmd = "cd %s; rm -rf %s; rm -rf %s.tgz" %(thisdir,addmodelname,addmodelname) cmd = 'cd "%s"; rm -rf %s; rm -rf %s.tgz' %(thisdir,addmodelname,addmodelname) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) lib/mscg/.gitignore 0 → 100644 +4 −0 Original line number Diff line number Diff line # files to ignore /liblink /includelink /MSCG-release-master lib/mscg/Install.py +72 −66 Original line number Diff line number Diff line Loading @@ -3,45 +3,48 @@ # Install.py tool to download, unpack, build, and link to the MS-CG library # used to automate the steps described in the README file in this dir import sys,os,re,commands from __future__ import print_function import sys,os,re,subprocess try: import ssl try: from urllib.request import urlretrieve as geturl except: from urllib import urlretrieve as geturl except: def geturl(url,fname): cmd = 'curl -L -o "%s" %s' % (fname,url) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) return txt # help message help = """ Syntax from src dir: make lib-mscg args="-h hpath hdir -g -b [suffix] -l" Syntax from lib dir: python Install.py -h hpath hdir -g -b [suffix] -l Syntax from src dir: make lib-mscg args="-p [path] -m [suffix]" Syntax from lib dir: python Install.py -p [path] -m [suffix] specify one or more options, order does not matter -h = set home dir of MS-CG to be hpath/hdir hpath can be full path, contain '~' or '.' chars default hpath = . = lib/mscg default hdir = MSCG-release-master = what GitHub zipfile unpacks to -g = grab (download) zipfile from MS-CG GitHub website unpack it to hpath/hdir hpath must already exist if hdir already exists, it will be deleted before unpack -b = build MS-CG library in its src dir optional suffix specifies which src/Make/Makefile.suffix to use -b = download and build MS-CG library (default) -p = specify folder of existing MS-CG installation -m = machine suffix specifies which src/Make/Makefile.suffix to use default suffix = g++_simple -l = create 2 softlinks (includelink,liblink) in lib/mscg to MS-CG src dir Example: make lib-mscg args="-g -b -l" # download/build in lib/mscg/MSCG-release-master make lib-mscg args="-b " # download/build in lib/mscg/MSCG-release-master """ # settings url = "https://github.com/uchicago-voth/MSCG-release/archive/master.zip" zipfile = "MS-CG-master.zip" zipdir = "MSCG-release-master" url = "http://github.com/uchicago-voth/MSCG-release/archive/master.tar.gz" tarfile = "MS-CG-master.tar.gz" tardir = "MSCG-release-master" # print error message or help def error(str=None): if not str: print help else: print "ERROR",str if not str: print(help) else: print("ERROR",str) sys.exit() # expand to full path name Loading @@ -54,76 +57,79 @@ def fullpath(path): args = sys.argv[1:] nargs = len(args) if nargs == 0: error() homepath = "." homedir = zipdir homedir = tardir grabflag = 0 buildflag = 0 buildflag = True pathflag = False linkflag = True msuffix = "g++_simple" linkflag = 0 iarg = 0 while iarg < nargs: if args[iarg] == "-h": if iarg+3 > nargs: error() homepath = args[iarg+1] homedir = args[iarg+2] iarg += 3 elif args[iarg] == "-g": grabflag = 1 iarg += 1 elif args[iarg] == "-b": buildflag = 1 if iarg+1 < nargs and args[iarg+1][0] != '-': if args[iarg] == "-p": if iarg+2 > nargs: error() mscgpath = fullpath(args[iarg+1]) pathflag = True buildflag = False iarg += 2 elif args[iarg] == "-m": if iarg+2 > nargs: error() msuffix = args[iarg+1] iarg += 1 iarg += 1 elif args[iarg] == "-l": linkflag = 1 iarg += 2 elif args[iarg] == "-b": buildflag = True iarg += 1 else: error() homepath = fullpath(homepath) if not os.path.isdir(homepath): error("MS-CG path does not exist") homedir = "%s/%s" % (homepath,homedir) # download and unpack MS-CG zipfile if (pathflag): if not os.path.isdir(mscgpath): error("MS-CG path does not exist") homedir = mscgpath if (buildflag and pathflag): error("Cannot use -b and -p flag at the same time") if grabflag: print "Downloading MS-CG ..." cmd = "curl -L %s > %s/%s" % (url,homepath,zipfile) print cmd print commands.getoutput(cmd) # download and unpack MS-CG tarfile print "Unpacking MS-CG zipfile ..." if os.path.exists("%s/%s" % (homepath,zipdir)): commands.getoutput("rm -rf %s/%s" % (homepath,zipdir)) cmd = "cd %s; unzip %s" % (homepath,zipfile) commands.getoutput(cmd) if os.path.basename(homedir) != zipdir: if os.path.exists(homedir): commands.getoutput("rm -rf %s" % homedir) os.rename("%s/%s" % (homepath,zipdir),homedir) if buildflag: print("Downloading MS-CG ...") geturl(url,"%s/%s" % (homepath,tarfile)) print("Unpacking MS-CG tarfile ...") if os.path.exists("%s/%s" % (homepath,tardir)): cmd = 'rm -rf "%s/%s"' % (homepath,tardir) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) cmd = 'cd "%s"; tar -xzvf %s' % (homepath,tarfile) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) os.remove("%s/%s" % (homepath,tarfile)) if os.path.basename(homedir) != tardir: if os.path.exists(homedir): cmd = 'rm -rf "%s"' % homedir subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) os.rename("%s/%s" % (homepath,tardir),homedir) # build MS-CG if buildflag: print "Building MS-CG ..." cmd = "cd %s/src; cp Make/Makefile.%s .; make -f Makefile.%s" % \ print("Building MS-CG ...") cmd = 'cd "%s/src"; cp Make/Makefile.%s .; make -f Makefile.%s' % \ (homedir,msuffix,msuffix) txt = commands.getoutput(cmd) print txt txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) print(txt.decode('UTF-8')) # create 2 links in lib/mscg to MS-CG src dir if linkflag: print "Creating links to MS-CG include and lib files" print("Creating links to MS-CG include and lib files") if os.path.isfile("includelink") or os.path.islink("includelink"): os.remove("includelink") if os.path.isfile("liblink") or os.path.islink("liblink"): os.remove("liblink") cmd = "ln -s %s/src includelink" % homedir commands.getoutput(cmd) cmd = "ln -s %s/src liblink" % homedir commands.getoutput(cmd) cmd = 'ln -s "%s/src" includelink' % homedir subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) cmd = 'ln -s "%s/src" liblink' % homedir subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) lib/poems/Makefile.g++ +1 −1 Original line number Diff line number Diff line Loading @@ -68,7 +68,7 @@ OBJ = $(SRC:.cpp=.o) # ------ SETTINGS ------ CC = g++ CCFLAGS = -O -g -fPIC -Wall #-Wno-deprecated CCFLAGS = -O3 -g -fPIC -Wall #-Wno-deprecated ARCHIVE = ar ARCHFLAG = -rc DEPFLAGS = -M Loading lib/poems/Makefile.mingw32-crossdeleted 100644 → 0 +0 −110 Original line number Diff line number Diff line # * # *_________________________________________________________________________* # * POEMS: PARALLELIZABLE OPEN SOURCE EFFICIENT MULTIBODY SOFTWARE * # * DESCRIPTION: SEE READ-ME * # * FILE NAME: Makefile * # * AUTHORS: See Author List * # * GRANTS: See Grants List * # * COPYRIGHT: (C) 2005 by Authors as listed in Author's List * # * LICENSE: Please see License Agreement * # * DOWNLOAD: Free at www.rpi.edu/~anderk5 * # * ADMINISTRATOR: Prof. Kurt Anderson * # * Computational Dynamics Lab * # * Rensselaer Polytechnic Institute * # * 110 8th St. Troy NY 12180 * # * CONTACT: anderk5@rpi.edu * # *_________________________________________________________________________*/ SHELL = /bin/sh # which file will be copied to Makefile.lammps EXTRAMAKE = Makefile.lammps.empty # ------ FILES ------ SRC_MAIN = workspace.cpp system.cpp poemsobject.cpp INC_MAIN = workspace.h system.h poemsobject.h SRC_BODY = body.cpp rigidbody.cpp particle.cpp inertialframe.cpp INC_BODY = bodies.h body.h rigidbody.h particle.h inertialframe.h SRC_JOINT = joint.cpp revolutejoint.cpp prismaticjoint.cpp sphericaljoint.cpp \ freebodyjoint.cpp body23joint.cpp mixedjoint.cpp INC_JOINT = joints.h joint.h revolutejoint.h prismaticjoint.h sphericaljoint.h \ freebodyjoint.h body23joint.h mixedjoint.h SRC_POINT = point.cpp fixedpoint.cpp INC_POINT = points.h point.h fixedpoint.h SRC_SOLVE = solver.cpp INC_SOLVE = solver.h SRC_ORDERN = onsolver.cpp onfunctions.cpp onbody.cpp INC_ORDERN = onsolver.h onfunctions.h onbody.h SRC_MAT = virtualmatrix.cpp matrix.cpp matrixfun.cpp mat3x3.cpp virtualcolmatrix.cpp \ colmatrix.cpp vect3.cpp virtualrowmatrix.cpp rowmatrix.cpp mat6x6.cpp vect6.cpp \ fastmatrixops.cpp colmatmap.cpp eulerparameters.cpp vect4.cpp norm.cpp mat4x4.cpp \ INC_MAT = matrices.h virtualmatrix.h matrix.h matrixfun.h mat3x3.h virtualcolmatrix.h \ colmatrix.h vect3.h virtualrowmatrix.h rowmatrix.h mat6x6.h vect6.h \ fastmatrixops.h colmatmap.h eulerparameters.h vect4.h norm.h mat4x4.h SRC_MISC = poemstreenode.cpp INC_MISC = poemslist.h poemstreenode.h poemstree.h poemsnodelib.h SystemProcessor.h defines.h POEMSChain.h SRC = $(SRC_MAIN) $(SRC_BODY) $(SRC_JOINT) $(SRC_POINT) $(SRC_SOLVE) $(SRC_ORDERN) $(SRC_MAT) $(SRC_MISC) INC = $(INC_MAIN) $(INC_BODY) $(INC_JOINT) $(INC_POINT) $(INC_SOLVE) $(INC_ORDERN) $(INC_MAT) $(INC_MISC) FILES = $(SRC) $(INC) Makefile Authors_List.txt Grants_List.txt POEMS_License.txt README Copyright_Notice # ------ DEFINITIONS ------ DIR = Obj_mingw32/ LIB = $(DIR)libpoems.a OBJ = $(SRC:%.cpp=$(DIR)%.o) # ------ SETTINGS ------ CC = i686-w64-mingw32-g++ CCFLAGS = -O2 -march=i686 -mtune=generic -mfpmath=387 -mpc64 \ -ffast-math -funroll-loops -finline-functions -fno-rtti \ -fno-exceptions -fstrict-aliasing \ -Wall -W -Wno-uninitialized ARCHIVE = i686-w64-mingw32-ar ARCHFLAG = -rcs DEPFLAGS = -M LINK = i686-w64-mingw32-g++ LINKFLAGS = -O USRLIB = SYSLIB = # ------ MAKE PROCEDURE ------ default: $(DIR) $(LIB) $(DIR): -mkdir $(DIR) $(LIB): $(OBJ) $(ARCHIVE) $(ARFLAGS) $(LIB) $(OBJ) @cp $(EXTRAMAKE) Makefile.lammps # ------ COMPILE RULES ------ $(DIR)%.o:%.cpp $(CC) $(CCFLAGS) -c $< -o $@ # ------ DEPENDENCIES ------ include .depend # ------ CLEAN ------ clean: -rm $(DIR)*.o $(DIR)*.d *~ $(LIB) tar: -tar -cvf ../POEMS.tar $(FILES) Loading
lib/kim/Install.py +17 −17 Original line number Diff line number Diff line Loading @@ -12,7 +12,7 @@ try: except: from urllib import urlretrieve as geturl except: def geturl(url,fname): cmd = "curl -o %s %s" % (fname,url) cmd = 'curl -L -o "%s" %s' % (fname,url) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) return txt Loading Loading @@ -139,7 +139,7 @@ if buildflag: if os.path.isdir(kimdir): print("kim-api is already installed at %s.\nRemoving it for re-install" % kimdir) cmd = "rm -rf %s" % kimdir cmd = 'rm -rf "%s"' % kimdir subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) # configure LAMMPS to use kim-api to be installed Loading @@ -160,48 +160,48 @@ if buildflag: print("Downloading kim-api tarball ...") geturl(url,"%s/%s.tgz" % (thisdir,version)) print("Unpacking kim-api tarball ...") cmd = "cd %s; rm -rf %s; tar zxvf %s.tgz" % (thisdir,version,version) cmd = 'cd "%s"; rm -rf "%s"; tar -xzvf %s.tgz' % (thisdir,version,version) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) # configure kim-api print("Configuring kim-api ...") cmd = "cd %s/%s; ./configure --prefix='%s'" % (thisdir,version,kimdir) cmd = 'cd "%s/%s"; ./configure --prefix="%s"' % (thisdir,version,kimdir) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) # build kim-api print("Configuring example Models") cmd = "cd %s/%s; make add-examples" % (thisdir,version) cmd = 'cd "%s/%s"; make add-examples' % (thisdir,version) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) if verboseflag: print (txt.decode("UTF-8")) if everythingflag: print("Configuring all OpenKIM models, this will take a while ...") cmd = "cd %s/%s; make add-OpenKIM" % (thisdir,version) cmd = 'cd "%s/%s"; make add-OpenKIM' % (thisdir,version) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) if verboseflag: print(txt.decode("UTF-8")) print("Building kim-api ...") cmd = "cd %s/%s; make" % (thisdir,version) cmd = 'cd "%s/%s"; make' % (thisdir,version) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) if verboseflag: print(txt.decode("UTF-8")) # install kim-api print("Installing kim-api ...") cmd = "cd %s/%s; make install" % (thisdir,version) cmd = 'cd "%s/%s"; make install' % (thisdir,version) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) if verboseflag: print(txt.decode("UTF-8")) cmd = "cd %s/%s; make install-set-default-to-v1" %(thisdir,version) cmd = 'cd "%s/%s"; make install-set-default-to-v1' %(thisdir,version) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) if verboseflag: print(txt.decode("UTF-8")) # remove source files print("Removing kim-api source and build files ...") cmd = "cd %s; rm -rf %s; rm -rf %s.tgz" % (thisdir,version,version) cmd = 'cd "%s"; rm -rf %s; rm -rf %s.tgz' % (thisdir,version,version) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) # add a single model (and possibly its driver) to existing KIM installation Loading @@ -219,11 +219,11 @@ if addflag: geturl(url,"%s/%s.tgz" % (thisdir,addmodelname)) print("Unpacking item tarball ...") cmd = "cd %s; tar zxvf %s.tgz" % (thisdir,addmodelname) cmd = 'cd "%s"; tar -xzvf %s.tgz' % (thisdir,addmodelname) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) print("Building item ...") cmd = "cd %s/%s; make; make install" %(thisdir,addmodelname) cmd = 'cd "%s/%s"; make; make install' %(thisdir,addmodelname) try: txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) except subprocess.CalledProcessError as e: Loading @@ -231,18 +231,18 @@ if addflag: # Error: but first, check to see if it needs a driver firstRunOutput = e.output.decode("UTF-8") cmd = "cd %s/%s; make kim-item-type" % (thisdir,addmodelname) cmd = 'cd "%s/%s"; make kim-item-type' % (thisdir,addmodelname) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) txt = txt.decode("UTF-8") if txt == "ParameterizedModel": # Get and install driver cmd = "cd %s/%s; make model-driver-name" % (thisdir,addmodelname) cmd = 'cd "%s/%s"; make model-driver-name' % (thisdir,addmodelname) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) adddrivername = txt.decode("UTF-8").strip() print("First installing model driver: %s..." % adddrivername) cmd = "cd %s; python Install.py -n -a %s" % (thisdir,adddrivername) cmd = 'cd "%s"; python Install.py -n -a %s' % (thisdir,adddrivername) try: txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) except subprocess.CalledProcessError as e: Loading @@ -254,7 +254,7 @@ if addflag: # now install the model that needed the driver print("Now installing model : %s" % addmodelname) cmd = "cd %s; python Install.py -n -a %s" % (thisdir,addmodelname) cmd = 'cd "%s"; python Install.py -n -a %s' % (thisdir,addmodelname) try: txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) except subprocess.CalledProcessError as e: Loading @@ -272,5 +272,5 @@ if addflag: if verboseflag: print(txt.decode("UTF-8")) print("Removing kim item source and build files ...") cmd = "cd %s; rm -rf %s; rm -rf %s.tgz" %(thisdir,addmodelname,addmodelname) cmd = 'cd "%s"; rm -rf %s; rm -rf %s.tgz' %(thisdir,addmodelname,addmodelname) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True)
lib/mscg/.gitignore 0 → 100644 +4 −0 Original line number Diff line number Diff line # files to ignore /liblink /includelink /MSCG-release-master
lib/mscg/Install.py +72 −66 Original line number Diff line number Diff line Loading @@ -3,45 +3,48 @@ # Install.py tool to download, unpack, build, and link to the MS-CG library # used to automate the steps described in the README file in this dir import sys,os,re,commands from __future__ import print_function import sys,os,re,subprocess try: import ssl try: from urllib.request import urlretrieve as geturl except: from urllib import urlretrieve as geturl except: def geturl(url,fname): cmd = 'curl -L -o "%s" %s' % (fname,url) txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) return txt # help message help = """ Syntax from src dir: make lib-mscg args="-h hpath hdir -g -b [suffix] -l" Syntax from lib dir: python Install.py -h hpath hdir -g -b [suffix] -l Syntax from src dir: make lib-mscg args="-p [path] -m [suffix]" Syntax from lib dir: python Install.py -p [path] -m [suffix] specify one or more options, order does not matter -h = set home dir of MS-CG to be hpath/hdir hpath can be full path, contain '~' or '.' chars default hpath = . = lib/mscg default hdir = MSCG-release-master = what GitHub zipfile unpacks to -g = grab (download) zipfile from MS-CG GitHub website unpack it to hpath/hdir hpath must already exist if hdir already exists, it will be deleted before unpack -b = build MS-CG library in its src dir optional suffix specifies which src/Make/Makefile.suffix to use -b = download and build MS-CG library (default) -p = specify folder of existing MS-CG installation -m = machine suffix specifies which src/Make/Makefile.suffix to use default suffix = g++_simple -l = create 2 softlinks (includelink,liblink) in lib/mscg to MS-CG src dir Example: make lib-mscg args="-g -b -l" # download/build in lib/mscg/MSCG-release-master make lib-mscg args="-b " # download/build in lib/mscg/MSCG-release-master """ # settings url = "https://github.com/uchicago-voth/MSCG-release/archive/master.zip" zipfile = "MS-CG-master.zip" zipdir = "MSCG-release-master" url = "http://github.com/uchicago-voth/MSCG-release/archive/master.tar.gz" tarfile = "MS-CG-master.tar.gz" tardir = "MSCG-release-master" # print error message or help def error(str=None): if not str: print help else: print "ERROR",str if not str: print(help) else: print("ERROR",str) sys.exit() # expand to full path name Loading @@ -54,76 +57,79 @@ def fullpath(path): args = sys.argv[1:] nargs = len(args) if nargs == 0: error() homepath = "." homedir = zipdir homedir = tardir grabflag = 0 buildflag = 0 buildflag = True pathflag = False linkflag = True msuffix = "g++_simple" linkflag = 0 iarg = 0 while iarg < nargs: if args[iarg] == "-h": if iarg+3 > nargs: error() homepath = args[iarg+1] homedir = args[iarg+2] iarg += 3 elif args[iarg] == "-g": grabflag = 1 iarg += 1 elif args[iarg] == "-b": buildflag = 1 if iarg+1 < nargs and args[iarg+1][0] != '-': if args[iarg] == "-p": if iarg+2 > nargs: error() mscgpath = fullpath(args[iarg+1]) pathflag = True buildflag = False iarg += 2 elif args[iarg] == "-m": if iarg+2 > nargs: error() msuffix = args[iarg+1] iarg += 1 iarg += 1 elif args[iarg] == "-l": linkflag = 1 iarg += 2 elif args[iarg] == "-b": buildflag = True iarg += 1 else: error() homepath = fullpath(homepath) if not os.path.isdir(homepath): error("MS-CG path does not exist") homedir = "%s/%s" % (homepath,homedir) # download and unpack MS-CG zipfile if (pathflag): if not os.path.isdir(mscgpath): error("MS-CG path does not exist") homedir = mscgpath if (buildflag and pathflag): error("Cannot use -b and -p flag at the same time") if grabflag: print "Downloading MS-CG ..." cmd = "curl -L %s > %s/%s" % (url,homepath,zipfile) print cmd print commands.getoutput(cmd) # download and unpack MS-CG tarfile print "Unpacking MS-CG zipfile ..." if os.path.exists("%s/%s" % (homepath,zipdir)): commands.getoutput("rm -rf %s/%s" % (homepath,zipdir)) cmd = "cd %s; unzip %s" % (homepath,zipfile) commands.getoutput(cmd) if os.path.basename(homedir) != zipdir: if os.path.exists(homedir): commands.getoutput("rm -rf %s" % homedir) os.rename("%s/%s" % (homepath,zipdir),homedir) if buildflag: print("Downloading MS-CG ...") geturl(url,"%s/%s" % (homepath,tarfile)) print("Unpacking MS-CG tarfile ...") if os.path.exists("%s/%s" % (homepath,tardir)): cmd = 'rm -rf "%s/%s"' % (homepath,tardir) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) cmd = 'cd "%s"; tar -xzvf %s' % (homepath,tarfile) subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) os.remove("%s/%s" % (homepath,tarfile)) if os.path.basename(homedir) != tardir: if os.path.exists(homedir): cmd = 'rm -rf "%s"' % homedir subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) os.rename("%s/%s" % (homepath,tardir),homedir) # build MS-CG if buildflag: print "Building MS-CG ..." cmd = "cd %s/src; cp Make/Makefile.%s .; make -f Makefile.%s" % \ print("Building MS-CG ...") cmd = 'cd "%s/src"; cp Make/Makefile.%s .; make -f Makefile.%s' % \ (homedir,msuffix,msuffix) txt = commands.getoutput(cmd) print txt txt = subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) print(txt.decode('UTF-8')) # create 2 links in lib/mscg to MS-CG src dir if linkflag: print "Creating links to MS-CG include and lib files" print("Creating links to MS-CG include and lib files") if os.path.isfile("includelink") or os.path.islink("includelink"): os.remove("includelink") if os.path.isfile("liblink") or os.path.islink("liblink"): os.remove("liblink") cmd = "ln -s %s/src includelink" % homedir commands.getoutput(cmd) cmd = "ln -s %s/src liblink" % homedir commands.getoutput(cmd) cmd = 'ln -s "%s/src" includelink' % homedir subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True) cmd = 'ln -s "%s/src" liblink' % homedir subprocess.check_output(cmd,stderr=subprocess.STDOUT,shell=True)
lib/poems/Makefile.g++ +1 −1 Original line number Diff line number Diff line Loading @@ -68,7 +68,7 @@ OBJ = $(SRC:.cpp=.o) # ------ SETTINGS ------ CC = g++ CCFLAGS = -O -g -fPIC -Wall #-Wno-deprecated CCFLAGS = -O3 -g -fPIC -Wall #-Wno-deprecated ARCHIVE = ar ARCHFLAG = -rc DEPFLAGS = -M Loading
lib/poems/Makefile.mingw32-crossdeleted 100644 → 0 +0 −110 Original line number Diff line number Diff line # * # *_________________________________________________________________________* # * POEMS: PARALLELIZABLE OPEN SOURCE EFFICIENT MULTIBODY SOFTWARE * # * DESCRIPTION: SEE READ-ME * # * FILE NAME: Makefile * # * AUTHORS: See Author List * # * GRANTS: See Grants List * # * COPYRIGHT: (C) 2005 by Authors as listed in Author's List * # * LICENSE: Please see License Agreement * # * DOWNLOAD: Free at www.rpi.edu/~anderk5 * # * ADMINISTRATOR: Prof. Kurt Anderson * # * Computational Dynamics Lab * # * Rensselaer Polytechnic Institute * # * 110 8th St. Troy NY 12180 * # * CONTACT: anderk5@rpi.edu * # *_________________________________________________________________________*/ SHELL = /bin/sh # which file will be copied to Makefile.lammps EXTRAMAKE = Makefile.lammps.empty # ------ FILES ------ SRC_MAIN = workspace.cpp system.cpp poemsobject.cpp INC_MAIN = workspace.h system.h poemsobject.h SRC_BODY = body.cpp rigidbody.cpp particle.cpp inertialframe.cpp INC_BODY = bodies.h body.h rigidbody.h particle.h inertialframe.h SRC_JOINT = joint.cpp revolutejoint.cpp prismaticjoint.cpp sphericaljoint.cpp \ freebodyjoint.cpp body23joint.cpp mixedjoint.cpp INC_JOINT = joints.h joint.h revolutejoint.h prismaticjoint.h sphericaljoint.h \ freebodyjoint.h body23joint.h mixedjoint.h SRC_POINT = point.cpp fixedpoint.cpp INC_POINT = points.h point.h fixedpoint.h SRC_SOLVE = solver.cpp INC_SOLVE = solver.h SRC_ORDERN = onsolver.cpp onfunctions.cpp onbody.cpp INC_ORDERN = onsolver.h onfunctions.h onbody.h SRC_MAT = virtualmatrix.cpp matrix.cpp matrixfun.cpp mat3x3.cpp virtualcolmatrix.cpp \ colmatrix.cpp vect3.cpp virtualrowmatrix.cpp rowmatrix.cpp mat6x6.cpp vect6.cpp \ fastmatrixops.cpp colmatmap.cpp eulerparameters.cpp vect4.cpp norm.cpp mat4x4.cpp \ INC_MAT = matrices.h virtualmatrix.h matrix.h matrixfun.h mat3x3.h virtualcolmatrix.h \ colmatrix.h vect3.h virtualrowmatrix.h rowmatrix.h mat6x6.h vect6.h \ fastmatrixops.h colmatmap.h eulerparameters.h vect4.h norm.h mat4x4.h SRC_MISC = poemstreenode.cpp INC_MISC = poemslist.h poemstreenode.h poemstree.h poemsnodelib.h SystemProcessor.h defines.h POEMSChain.h SRC = $(SRC_MAIN) $(SRC_BODY) $(SRC_JOINT) $(SRC_POINT) $(SRC_SOLVE) $(SRC_ORDERN) $(SRC_MAT) $(SRC_MISC) INC = $(INC_MAIN) $(INC_BODY) $(INC_JOINT) $(INC_POINT) $(INC_SOLVE) $(INC_ORDERN) $(INC_MAT) $(INC_MISC) FILES = $(SRC) $(INC) Makefile Authors_List.txt Grants_List.txt POEMS_License.txt README Copyright_Notice # ------ DEFINITIONS ------ DIR = Obj_mingw32/ LIB = $(DIR)libpoems.a OBJ = $(SRC:%.cpp=$(DIR)%.o) # ------ SETTINGS ------ CC = i686-w64-mingw32-g++ CCFLAGS = -O2 -march=i686 -mtune=generic -mfpmath=387 -mpc64 \ -ffast-math -funroll-loops -finline-functions -fno-rtti \ -fno-exceptions -fstrict-aliasing \ -Wall -W -Wno-uninitialized ARCHIVE = i686-w64-mingw32-ar ARCHFLAG = -rcs DEPFLAGS = -M LINK = i686-w64-mingw32-g++ LINKFLAGS = -O USRLIB = SYSLIB = # ------ MAKE PROCEDURE ------ default: $(DIR) $(LIB) $(DIR): -mkdir $(DIR) $(LIB): $(OBJ) $(ARCHIVE) $(ARFLAGS) $(LIB) $(OBJ) @cp $(EXTRAMAKE) Makefile.lammps # ------ COMPILE RULES ------ $(DIR)%.o:%.cpp $(CC) $(CCFLAGS) -c $< -o $@ # ------ DEPENDENCIES ------ include .depend # ------ CLEAN ------ clean: -rm $(DIR)*.o $(DIR)*.d *~ $(LIB) tar: -tar -cvf ../POEMS.tar $(FILES)
