Commit acf02bb1 authored by Richard Berger's avatar Richard Berger
Browse files

Revert split of Commands_bond.rst as requested by @sjplimp

parent 4c13001a

doc/src/Commands.rst

+0 −3
Original line number Diff line number Diff line
@@ -21,9 +21,6 @@ commands in it are used to define a LAMMPS simulation. 
   Commands_compute

   Commands_pair

   Commands_bond

   Commands_angle

   Commands_dihedral

   Commands_improper

   Commands_kspace



.. toctree::

doc/src/Commands_all.rst

+4 −4
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@@ -5,10 +5,10 @@ 
   * :doc:`Fix styles <Commands_fix>`

   * :doc:`Compute styles <Commands_compute>`

   * :doc:`Pair styles <Commands_pair>`

   * :doc:`Bond styles <Commands_bond>`

   * :doc:`Angle styles <Commands_angle>`

   * :doc:`Dihedral styles <Commands_dihedral>`

   * :doc:`Improper styles <Commands_improper>`

   * :ref:`Bond styles <bond>`

   * :ref:`Angle styles <angle>`

   * :ref:`Dihedral styles <dihedral>`

   * :ref:`Improper styles <improper>`

   * :doc:`KSpace styles <Commands_kspace>`



General commands

doc/src/Commands_angle.rst

deleted100644 → 0
+0 −55
Original line number Diff line number Diff line 
.. table_from_list::

   :columns: 3



   * :doc:`General commands <Commands_all>`

   * :doc:`Fix styles <Commands_fix>`

   * :doc:`Compute styles <Commands_compute>`

   * :doc:`Pair styles <Commands_pair>`

   * :doc:`Bond styles <Commands_bond>`

   * :doc:`Angle styles <Commands_angle>`

   * :doc:`Dihedral styles <Commands_dihedral>`

   * :doc:`Improper styles <Commands_improper>`

   * :doc:`KSpace styles <Commands_kspace>`





.. _angle:



Angle\_style potentials

=======================



All LAMMPS :doc:`angle_style <angle_style>` commands.  Some styles have

accelerated versions.  This is indicated by additional letters in

parenthesis: g = GPU, i = USER-INTEL, k = KOKKOS, o = USER-OMP, t =

OPT.



.. table_from_list::

   :columns: 4



   * :doc:`none <angle_none>`

   * :doc:`zero <angle_zero>`

   * :doc:`hybrid <angle_hybrid>`

   *

   *

   *

   *

   *

   * :doc:`charmm (iko) <angle_charmm>`

   * :doc:`class2 (ko) <angle_class2>`

   * :doc:`class2/p6 <angle_class2>`

   * :doc:`cosine (ko) <angle_cosine>`

   * :doc:`cosine/buck6d <angle_cosine_buck6d>`

   * :doc:`cosine/delta (o) <angle_cosine_delta>`

   * :doc:`cosine/periodic (o) <angle_cosine_periodic>`

   * :doc:`cosine/shift (o) <angle_cosine_shift>`

   * :doc:`cosine/shift/exp (o) <angle_cosine_shift_exp>`

   * :doc:`cosine/squared (o) <angle_cosine_squared>`

   * :doc:`cross <angle_cross>`

   * :doc:`dipole (o) <angle_dipole>`

   * :doc:`fourier (o) <angle_fourier>`

   * :doc:`fourier/simple (o) <angle_fourier_simple>`

   * :doc:`harmonic (iko) <angle_harmonic>`

   * :doc:`mm3 <angle_mm3>`

   * :doc:`quartic (o) <angle_quartic>`

   * :doc:`sdk (o) <angle_sdk>`

   * :doc:`table (o) <angle_table>`

   *

doc/src/Commands_bond.rst

+126 −7
Original line number Diff line number Diff line
@@ -5,18 +5,18 @@ 
   * :doc:`Fix styles <Commands_fix>`

   * :doc:`Compute styles <Commands_compute>`

   * :doc:`Pair styles <Commands_pair>`

   * :doc:`Bond styles <Commands_bond>`

   * :doc:`Angle styles <Commands_angle>`

   * :doc:`Dihedral styles <Commands_dihedral>`

   * :doc:`Improper styles <Commands_improper>`

   * :ref:`Bond styles <bond>`

   * :ref:`Angle styles <angle>`

   * :ref:`Dihedral styles <dihedral>`

   * :ref:`Improper styles <improper>`

   * :doc:`KSpace styles <Commands_kspace>`



.. _bond:



Bond\_style potentials

=================================

bond_style potentials

=====================



All LAMMPS :doc:`bond\_style <bond_style>` commands.  Some styles have

All LAMMPS :doc:`bond_style <bond_style>` commands.  Some styles have

accelerated versions.  This is indicated by additional letters in

parenthesis: g = GPU, i = USER-INTEL, k = KOKKOS, o = USER-OMP, t =

OPT.
@@ -48,3 +48,122 @@ OPT. 
   * :doc:`table (o) <bond_table>`

   *

   *



---



.. _angle:



angle_style potentials

======================



All LAMMPS :doc:`angle_style <angle_style>` commands.  Some styles have

accelerated versions.  This is indicated by additional letters in

parenthesis: g = GPU, i = USER-INTEL, k = KOKKOS, o = USER-OMP, t =

OPT.



.. table_from_list::

   :columns: 4



   * :doc:`none <angle_none>`

   * :doc:`zero <angle_zero>`

   * :doc:`hybrid <angle_hybrid>`

   *

   *

   *

   *

   *

   * :doc:`charmm (iko) <angle_charmm>`

   * :doc:`class2 (ko) <angle_class2>`

   * :doc:`class2/p6 <angle_class2>`

   * :doc:`cosine (ko) <angle_cosine>`

   * :doc:`cosine/buck6d <angle_cosine_buck6d>`

   * :doc:`cosine/delta (o) <angle_cosine_delta>`

   * :doc:`cosine/periodic (o) <angle_cosine_periodic>`

   * :doc:`cosine/shift (o) <angle_cosine_shift>`

   * :doc:`cosine/shift/exp (o) <angle_cosine_shift_exp>`

   * :doc:`cosine/squared (o) <angle_cosine_squared>`

   * :doc:`cross <angle_cross>`

   * :doc:`dipole (o) <angle_dipole>`

   * :doc:`fourier (o) <angle_fourier>`

   * :doc:`fourier/simple (o) <angle_fourier_simple>`

   * :doc:`harmonic (iko) <angle_harmonic>`

   * :doc:`mm3 <angle_mm3>`

   * :doc:`quartic (o) <angle_quartic>`

   * :doc:`sdk (o) <angle_sdk>`

   * :doc:`table (o) <angle_table>`

   *



---



.. _dihedral:



dihedral_style potentials

=========================



All LAMMPS :doc:`dihedral_style <dihedral_style>` commands.  Some styles

have accelerated versions.  This is indicated by additional letters in

parenthesis: g = GPU, i = USER-INTEL, k = KOKKOS, o = USER-OMP, t =

OPT.





.. table_from_list::

   :columns: 4



   * :doc:`none <dihedral_none>`

   * :doc:`zero <dihedral_zero>`

   * :doc:`hybrid <dihedral_hybrid>`

   *

   *

   *

   *

   *

   * :doc:`charmm (iko) <dihedral_charmm>`

   * :doc:`charmmfsw <dihedral_charmm>`

   * :doc:`class2 (ko) <dihedral_class2>`

   * :doc:`cosine/shift/exp (o) <dihedral_cosine_shift_exp>`

   * :doc:`fourier (io) <dihedral_fourier>`

   * :doc:`harmonic (iko) <dihedral_harmonic>`

   * :doc:`helix (o) <dihedral_helix>`

   * :doc:`multi/harmonic (o) <dihedral_multi_harmonic>`

   * :doc:`nharmonic (o) <dihedral_nharmonic>`

   * :doc:`opls (iko) <dihedral_opls>`

   * :doc:`quadratic (o) <dihedral_quadratic>`

   * :doc:`spherical <dihedral_spherical>`

   * :doc:`table (o) <dihedral_table>`

   * :doc:`table/cut <dihedral_table_cut>`

   *

   *



.. _improper:



improper_style potentials

=========================



All LAMMPS :doc:`improper\_style <improper_style>` commands.  Some styles

have accelerated versions.  This is indicated by additional letters in

parenthesis: g = GPU, i = USER-INTEL, k = KOKKOS, o = USER-OMP, t =

OPT.



.. table_from_list::

   :columns: 4



   * :doc:`none <improper_none>`

   * :doc:`zero <improper_zero>`

   * :doc:`hybrid <improper_hybrid>`

   *

   *

   *

   *

   *

   * :doc:`class2 (ko) <improper_class2>`

   * :doc:`cossq (o) <improper_cossq>`

   * :doc:`cvff (io) <improper_cvff>`

   * :doc:`distance <improper_distance>`

   * :doc:`distharm <improper_distharm>`

   * :doc:`fourier (o) <improper_fourier>`

   * :doc:`harmonic (iko) <improper_harmonic>`

   * :doc:`inversion/harmonic <improper_inversion_harmonic>`

   * :doc:`ring (o) <improper_ring>`

   * :doc:`sqdistharm <improper_sqdistharm>`

   * :doc:`umbrella (o) <improper_umbrella>`

   *

doc/src/Commands_compute.rst

+4 −4
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@@ -5,10 +5,10 @@ 
   * :doc:`Fix styles <Commands_fix>`

   * :doc:`Compute styles <Commands_compute>`

   * :doc:`Pair styles <Commands_pair>`

   * :doc:`Bond styles <Commands_bond>`

   * :doc:`Angle styles <Commands_angle>`

   * :doc:`Dihedral styles <Commands_dihedral>`

   * :doc:`Improper styles <Commands_improper>`

   * :ref:`Bond styles <bond>`

   * :ref:`Angle styles <angle>`

   * :ref:`Dihedral styles <dihedral>`

   * :ref:`Improper styles <improper>`

   * :doc:`KSpace styles <Commands_kspace>`



Compute commands

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