source code for fix widom

/* -*- c++ -*- ----------------------------------------------------------

   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator

   http://lammps.sandia.gov, Sandia National Laboratories

   Steve Plimpton, sjplimp@sandia.gov

   Copyright (2003) Sandia Corporation.  Under the terms of Contract

   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains

   certain rights in this software.  This software is distributed under

   the GNU General Public License.

   See the README file in the top-level LAMMPS directory.

------------------------------------------------------------------------- */

#ifdef FIX_CLASS

FixStyle(widom,FixWidom)

#else

#ifndef LMP_FIX_WIDOM_H

#define LMP_FIX_WIDOM_H

#include <cstdio>

#include "fix.h"

namespace LAMMPS_NS {

class FixWidom : public Fix {

 public:

  FixWidom(class LAMMPS *, int, char **);

  ~FixWidom();

  int setmask();

  void init();

  void pre_exchange();

  void attempt_atomic_insertion();

  void attempt_molecule_insertion();

  void attempt_atomic_insertion_full();

  void attempt_molecule_insertion_full();

  double energy(int, int, tagint, double *);

  double molecule_energy(tagint);

  double energy_full();

  void update_gas_atoms_list();

  double compute_vector(int);

  double memory_usage();

  void write_restart(FILE *);

  void restart(char *);

  void grow_molecule_arrays(int);

 private:

  int molecule_group,molecule_group_bit;

  int molecule_group_inversebit;

  int exclusion_group,exclusion_group_bit;

  int nwidom_type,nevery,seed;

  int ninsertions;

  int ngas;                 // # of gas atoms on all procs

  int ngas_local;           // # of gas atoms on this proc

  int exchmode;             // exchange ATOM or MOLECULE

  int movemode;             // move ATOM or MOLECULE

  int regionflag;           // 0 = anywhere in box, 1 = specific region

  int iregion;              // widom region

  char *idregion;           // widom region id

  bool charge_flag;         // true if user specified atomic charge

  bool full_flag;           // true if doing full system energy calculations

  int natoms_per_molecule;  // number of atoms in each inserted molecule

  int nmaxmolatoms;         // number of atoms allocated for molecule arrays

  double ave_widom_chemical_potential;

  int widom_nmax;

  int max_region_attempts;

  double gas_mass;

  double insertion_temperature;

  double beta,sigma,volume;

  double charge;

  double xlo,xhi,ylo,yhi,zlo,zhi;

  double region_xlo,region_xhi,region_ylo,region_yhi,region_zlo,region_zhi;

  double region_volume;

  double energy_stored;  // full energy of old/current configuration

  double *sublo,*subhi;

  int *local_gas_list;

  double **cutsq;

  double **molcoords;

  double *molq;

  imageint *molimage;

  imageint imagezero;

  double energy_intra;

  class Pair *pair;

  class RanPark *random_equal;

  class Atom *model_atom;

  class Molecule **onemols;

  int imol,nmol;

  int triclinic;                         // 0 = orthog box, 1 = triclinic

  class Compute *c_pe;

  void options(int, char **);

};

}

#endif

#endif

/* ERROR/WARNING messages:

E: Illegal ... command

Self-explanatory.  Check the input script syntax and compare to the

documentation for the command.  You can use -echo screen as a

command-line option when running LAMMPS to see the offending line.

E: Fix Widom does not (yet) work with atom_style template

Self-explanatory.

E: Fix Widom region does not support a bounding box

Not all regions represent bounded volumes.  You cannot use

such a region with the fix Widom command.

E: Fix Widom region cannot be dynamic

Only static regions can be used with fix Widom.

E: Fix Widom region extends outside simulation box

Self-explanatory.

E: Fix Widom molecule must have coordinates

The defined molecule does not specify coordinates.

E: Fix Widom molecule must have atom types

The defined molecule does not specify atom types.

E: Atom type must be zero in fix Widom mol command

Self-explanatory.

E: Fix Widom molecule has charges, but atom style does not

Self-explanatory.

E: Fix Widom molecule template ID must be same as atom_style template ID

When using atom_style template, you cannot insert molecules that are

not in that template.

E: Fix Widom atom has charge, but atom style does not

Self-explanatory.

UNDOCUMENTED

E: Molecule template ID for fix Widom does not exist

Self-explanatory.

W: Molecule template for fix Widom has multiple molecules

The fix Widom command will only create molecules of a single type,

i.e. the first molecule in the template.

E: Region ID for fix Widom does not exist

Self-explanatory.

W: Fix Widom using full_energy option

Fix Widom has automatically turned on the full_energy option since it

is required for systems like the one specified by the user. User input

included one or more of the following: kspace, a hybrid

pair style, an eam pair style, tail correction,

or no "single" function for the pair style.

E: Invalid atom type in fix Widom command

The atom type specified in the Widom command does not exist.

E: Fix Widom cannot exchange individual atoms belonging to a molecule

This is an error since you should not delete only one atom of a

molecule.  The user has specified atomic (non-molecular) gas

exchanges, but an atom belonging to a molecule could be deleted.

E: All mol IDs should be set for fix Widom group atoms

The molecule flag is on, yet not all molecule ids in the fix group

have been set to non-zero positive values by the user. This is an

error since all atoms in the fix Widom group are eligible for deletion,

rotation, and translation and therefore must have valid molecule ids.

E: Fix Widom molecule command requires that atoms have molecule attributes

Should not choose the Widom molecule feature if no molecules are being

simulated. The general molecule flag is off, but Widom's molecule flag

is on.

E: Cannot use fix Widom in a 2d simulation

Fix Widom is set up to run in 3d only. No 2d simulations with fix Widom 

are allowed.

E: Could not find fix Widom exclusion group ID

Self-explanatory.

E: Illegal fix Widom gas mass <= 0

The computed mass of the designated gas molecule or atom type was less

than or equal to zero.

E: Cannot do Widom on atoms in atom_modify first group

This is a restriction due to the way atoms are organized in a list to

enable the atom_modify first command.

W: Fix Widom is being applied to the default group all

This is allowed, but it will result in Monte Carlo moves

being performed on all the atoms in the system, which is

often not what is intended.

E: Could not find specified fix Widom group ID

Self-explanatory.

E: fix Widom does currently not support full_energy option with molecules on more than 1 MPI process.

UNDOCUMENTED

E: Fix Widom put atom outside box

This should not normally happen.  Contact the developers.

E: Fix Widom ran out of available molecule IDs

See the setting for tagint in the src/lmptype.h file.

E: Fix Widom ran out of available atom IDs

See the setting for tagint in the src/lmptype.h file.

E: Too many total atoms

See the setting for bigint in the src/lmptype.h file.

*/