Commit a499b284 authored by sjplimp's avatar sjplimp
Browse files

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5545 f3b2605a-c512-4ea7-a41b-209d697bcdaa
parent 9e1bc37b
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lib/gpu/crml_gpu.cpp

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/* ----------------------------------------------------------------------
   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
   http://lammps.sandia.gov, Sandia National Laboratories
   Steve Plimpton, sjplimp@sandia.gov

   Copyright (2003) Sandia Corporation.  Under the terms of Contract
   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
   certain rights in this software.  This software is distributed under 
   the GNU General Public License.

   See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
 
/* ----------------------------------------------------------------------
   Contributing authors: Mike Brown (ORNL), brownw@ornl.gov
------------------------------------------------------------------------- */

#include <iostream>
#include <cassert>
#include <math.h>

#include "crml_gpu_memory.h"

using namespace std;

static CRML_GPU_Memory<PRECISION,ACC_PRECISION> CRMLMF;

// ---------------------------------------------------------------------------
// Allocate memory on host and device and copy constants to device
// ---------------------------------------------------------------------------
bool crml_gpu_init(const int ntypes, double cut_bothsq, double **host_lj1,
                   double **host_lj2, double **host_lj3, double **host_lj4,
                   double **offset, double *special_lj, const int inum,
                   const int nall, const int max_nbors, const int maxspecial,
                   const double cell_size, int &gpu_mode, FILE *screen,
                   double host_cut_ljsq, double host_cut_coulsq,
                   double *host_special_coul, const double qqrd2e,
                   const double g_ewald, const double cut_lj_innersq,
                   const double denom_lj, double **epsilon,
                   double **sigma, const bool mix_arithmetic) {
  CRMLMF.clear();
  gpu_mode=CRMLMF.device->gpu_mode();
  double gpu_split=CRMLMF.device->particle_split();
  int first_gpu=CRMLMF.device->first_device();
  int last_gpu=CRMLMF.device->last_device();
  int world_me=CRMLMF.device->world_me();
  int gpu_rank=CRMLMF.device->gpu_rank();
  int procs_per_gpu=CRMLMF.device->procs_per_gpu();

  CRMLMF.device->init_message(screen,"lj/charmm/coul/long",first_gpu,last_gpu);

  bool message=false;
  if (CRMLMF.device->replica_me()==0 && screen)
    message=true;

  if (message) {
    fprintf(screen,"Initializing GPU and compiling on process 0...");
    fflush(screen);
  }

  if (world_me==0) {
    bool init_ok=CRMLMF.init(ntypes, cut_bothsq, host_lj1, host_lj2, host_lj3,
                             host_lj4, offset, special_lj, inum, nall, 300,
                             maxspecial, cell_size, gpu_split, screen,
                             host_cut_ljsq, host_cut_coulsq, host_special_coul,
                             qqrd2e, g_ewald, cut_lj_innersq, denom_lj,
                             epsilon,sigma,mix_arithmetic);
    if (!init_ok)
      return false;
  }

  CRMLMF.device->world_barrier();
  if (message)
    fprintf(screen,"Done.\n");

  for (int i=0; i<procs_per_gpu; i++) {
    if (message) {
      if (last_gpu-first_gpu==0)
        fprintf(screen,"Initializing GPU %d on core %d...",first_gpu,i);
      else
        fprintf(screen,"Initializing GPUs %d-%d on core %d...",first_gpu,
                last_gpu,i);
      fflush(screen);
    }
    if (gpu_rank==i && world_me!=0) {
      bool init_ok=CRMLMF.init(ntypes, cut_bothsq, host_lj1, host_lj2, host_lj3,
                               host_lj4, offset, special_lj, inum, nall, 300,
                               maxspecial, cell_size, gpu_split,
                               screen, host_cut_ljsq, host_cut_coulsq,
                               host_special_coul, qqrd2e, g_ewald, 
                               cut_lj_innersq, denom_lj, epsilon, sigma,
                               mix_arithmetic);
      if (!init_ok)
        return false;
    }
    CRMLMF.device->gpu_barrier();
    if (message) 
      fprintf(screen,"Done.\n");
  }
  if (message)
    fprintf(screen,"\n");
  return true;
}

void crml_gpu_clear() {
  CRMLMF.clear();
}

int * crml_gpu_compute_n(const int timestep, const int ago, const int inum_full,
                         const int nall, double **host_x, int *host_type,
                         double *boxlo, double *boxhi, int *tag, int **nspecial, 
                         int **special, const bool eflag, const bool vflag,
                         const bool eatom, const bool vatom, int &host_start,
                         const double cpu_time, bool &success, double *host_q) {
  return CRMLMF.compute(timestep, ago, inum_full, nall, host_x, host_type, boxlo,
                        boxhi, tag, nspecial, special, eflag, vflag, eatom,
                        vatom, host_start, cpu_time, success, host_q);
}  
			
void crml_gpu_compute(const int timestep, const int ago, const int inum_full,
	 	     const int nall, double **host_x, int *host_type,
                     int *ilist, int *numj, int **firstneigh,
		     const bool eflag, const bool vflag, const bool eatom,
                     const bool vatom, int &host_start, const double cpu_time,
                     bool &success, double *host_q) {
  CRMLMF.compute(timestep,ago,inum_full,nall,host_x,host_type,ilist,numj,
                firstneigh,eflag,vflag,eatom,vatom,host_start,cpu_time,success,
                host_q);
}

double crml_gpu_bytes() {
  return CRMLMF.host_memory_usage();
}

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Original line number Diff line number Diff line
/* ----------------------------------------------------------------------
   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
   http://lammps.sandia.gov, Sandia National Laboratories
   Steve Plimpton, sjplimp@sandia.gov

   Copyright (2003) Sandia Corporation.  Under the terms of Contract
   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
   certain rights in this software.  This software is distributed under 
   the GNU General Public License.

   See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
 
/* ----------------------------------------------------------------------
   Contributing authors: Mike Brown (ORNL), brownw@ornl.gov
------------------------------------------------------------------------- */

#ifdef USE_OPENCL
#include "crml_gpu_cl.h"
#else
#include "crml_gpu_ptx.h"
#endif

#include "crml_gpu_memory.h"
#include <cassert>
#define CRML_GPU_MemoryT CRML_GPU_Memory<numtyp, acctyp>

extern PairGPUDevice<PRECISION,ACC_PRECISION> pair_gpu_device;

template <class numtyp, class acctyp>
CRML_GPU_MemoryT::CRML_GPU_Memory() : ChargeGPUMemory<numtyp,acctyp>(),
                                    _allocated(false) {
}

template <class numtyp, class acctyp>
CRML_GPU_MemoryT::~CRML_GPU_Memory() {
  clear();
}
 
template <class numtyp, class acctyp>
int CRML_GPU_MemoryT::bytes_per_atom(const int max_nbors) const {
  return this->bytes_per_atom_atomic(max_nbors);
}

template <class numtyp, class acctyp>
bool CRML_GPU_MemoryT::init(const int ntypes,
                           double host_cut_bothsq, double **host_lj1, 
                           double **host_lj2, double **host_lj3, 
                           double **host_lj4, double **host_offset, 
                           double *host_special_lj, const int nlocal,
                           const int nall, const int max_nbors,
                           const int maxspecial, const double cell_size,
                           const double gpu_split, FILE *_screen,
                           double host_cut_ljsq, const double host_cut_coulsq,
                           double *host_special_coul, const double qqrd2e,
                           const double g_ewald, const double cut_lj_innersq,
                           const double denom_lj, double **epsilon,
                           double **sigma, const bool mix_arithmetic) {
  this->init_atomic(nlocal,nall,max_nbors,maxspecial,cell_size,gpu_split,
                    _screen,crml_gpu_kernel);

  // If atom type constants fit in shared memory use fast kernel
  int lj_types=ntypes;
  shared_types=false;
  if (this->_block_size>=64 && mix_arithmetic)
    shared_types=true;
  _lj_types=lj_types;

  // Allocate a host write buffer for data initialization
  int h_size=lj_types*lj_types;
  if (h_size<MAX_BIO_SHARED_TYPES)
    h_size=MAX_BIO_SHARED_TYPES;
  UCL_H_Vec<numtyp> host_write(h_size*32,*(this->ucl_device),
                               UCL_WRITE_OPTIMIZED);
  for (int i=0; i<h_size*32; i++)
    host_write[i]=0.0;

  lj1.alloc(lj_types*lj_types,*(this->ucl_device),UCL_READ_ONLY);
  this->atom->type_pack4(ntypes,lj_types,lj1,host_write,host_lj1,host_lj2,
                         host_lj3,host_lj4);

  ljd.alloc(MAX_BIO_SHARED_TYPES,*(this->ucl_device),UCL_READ_ONLY);
  this->atom->self_pack2(ntypes,ljd,host_write,epsilon,sigma);

  sp_lj.alloc(8,*(this->ucl_device),UCL_READ_ONLY);
  for (int i=0; i<4; i++) {
    host_write[i]=host_special_lj[i];
    host_write[i+4]=host_special_coul[i];
  }
  ucl_copy(sp_lj,host_write,8,false);

  _cut_bothsq = host_cut_bothsq;
  _cut_coulsq = host_cut_coulsq;
  _cut_ljsq = host_cut_ljsq;
  _cut_lj_innersq = cut_lj_innersq;
  _qqrd2e=qqrd2e;
  _g_ewald=g_ewald;
  _denom_lj=denom_lj;

  _allocated=true;
  this->_max_bytes=lj1.row_bytes()+ljd.row_bytes()+sp_lj.row_bytes();
  return true;
}

template <class numtyp, class acctyp>
void CRML_GPU_MemoryT::clear() {
  if (!_allocated)
    return;
  _allocated=false;

  lj1.clear();
  ljd.clear();
  sp_lj.clear();
  this->clear_atomic();
}

template <class numtyp, class acctyp>
double CRML_GPU_MemoryT::host_memory_usage() const {
  return this->host_memory_usage_atomic()+sizeof(CRML_GPU_Memory<numtyp,acctyp>);
}

// ---------------------------------------------------------------------------
// Calculate energies, forces, and torques
// ---------------------------------------------------------------------------
template <class numtyp, class acctyp>
void CRML_GPU_MemoryT::loop(const bool _eflag, const bool _vflag) {
  // Compute the block size and grid size to keep all cores busy
  const int BX=this->block_size();
  int eflag, vflag;
  if (_eflag)
    eflag=1;
  else
    eflag=0;

  if (_vflag)
    vflag=1;
  else
    vflag=0;
  
  int GX=static_cast<int>(ceil(static_cast<double>(this->atom->inum())/BX));

  int ainum=this->atom->inum();
  int anall=this->atom->nall();
  int nbor_pitch=this->nbor->nbor_pitch();
  this->time_pair.start();
  if (shared_types) {
    this->k_pair_fast.set_size(GX,BX);
    this->k_pair_fast.run(&this->atom->dev_x.begin(), &ljd.begin(),
                          &sp_lj.begin(), &this->nbor->dev_nbor.begin(),
                          &this->atom->dev_ans.begin(),
                          &this->atom->dev_engv.begin(), &eflag, &vflag,
                          &ainum, &anall, &nbor_pitch,
                          &this->atom->dev_q.begin(), &_cut_coulsq,
                          &_qqrd2e, &_g_ewald, &_denom_lj, &_cut_bothsq,
                          &_cut_ljsq, &_cut_lj_innersq);
  } else {
    this->k_pair.set_size(GX,BX);
    this->k_pair.run(&this->atom->dev_x.begin(), &lj1.begin(),
                     &_lj_types, &sp_lj.begin(), &this->nbor->dev_nbor.begin(),
                     &this->atom->dev_ans.begin(),
                     &this->atom->dev_engv.begin(), &eflag, &vflag, &ainum,
                     &anall, &nbor_pitch, &this->atom->dev_q.begin(),
                     &_cut_coulsq, &_qqrd2e, &_g_ewald, &_denom_lj,
                     &_cut_bothsq, &_cut_ljsq, &_cut_lj_innersq);
  }
  this->time_pair.stop();
}

template class CRML_GPU_Memory<PRECISION,ACC_PRECISION>;
+79 −0
Original line number Diff line number Diff line
/* ----------------------------------------------------------------------
   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
   http://lammps.sandia.gov, Sandia National Laboratories
   Steve Plimpton, sjplimp@sandia.gov

   Copyright (2003) Sandia Corporation.  Under the terms of Contract
   DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
   certain rights in this software.  This software is distributed under 
   the GNU General Public License.

   See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
 
/* ----------------------------------------------------------------------
   Contributing authors: Mike Brown (ORNL), brownw@ornl.gov
------------------------------------------------------------------------- */

#ifndef CRML_GPU_MEMORY_H
#define CRML_GPU_MEMORY_H

#include "charge_gpu_memory.h"

template <class numtyp, class acctyp>
class CRML_GPU_Memory : public ChargeGPUMemory<numtyp, acctyp> {
 public:
  CRML_GPU_Memory();
  ~CRML_GPU_Memory();

  /// Clear any previous data and set up for a new LAMMPS run
  /** \param max_nbors initial number of rows in the neighbor matrix
    * \param cell_size cutoff + skin
    * \param gpu_split fraction of particles handled by device **/
  bool init(const int ntypes, double host_cut_bothsq,
            double **host_lj1, double **host_lj2, double **host_lj3,
            double **host_lj4, double **host_offset, double *host_special_lj,
            const int nlocal, const int nall, const int max_nbors, 
            const int maxspecial, const double cell_size, 
            const double gpu_split, FILE *screen, double host_cut_ljsq,
            const double host_cut_coulsq, double *host_special_coul,
            const double qqrd2e, const double g_ewald,
            const double cut_lj_innersq, const double denom_lj, 
            double **epsilon, double **sigma, const bool mix_arithmetic);

  /// Clear all host and device data
  /** \note This is called at the beginning of the init() routine **/
  void clear();

  /// Returns memory usage on device per atom
  int bytes_per_atom(const int max_nbors) const;

  /// Total host memory used by library for pair style
  double host_memory_usage() const;

  // --------------------------- TYPE DATA --------------------------

  /// x = lj1, y = lj2, z = lj3, w = lj4
  UCL_D_Vec<numtyp4> lj1;
  /// x = epsilon, y = sigma
  UCL_D_Vec<numtyp2> ljd;
  /// Special LJ values [0-3] and Special Coul values [4-7]
  UCL_D_Vec<numtyp> sp_lj;

  /// If atom type constants fit in shared memory, use fast kernels
  bool shared_types;

  /// Number of atom types 
  int _lj_types;

  numtyp _qqrd2e, _g_ewald, _denom_lj;

  numtyp _cut_coulsq, _cut_bothsq, _cut_ljsq, _cut_lj_innersq;

 private:
  bool _allocated;
  void loop(const bool _eflag, const bool _vflag);
};

#endif