Unverified Commit 999ed36e authored by Axel Kohlmeyer's avatar Axel Kohlmeyer
Browse files

update log files for new version

parent bb5b931d
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+34 −34
Original line number Diff line number Diff line
@@ -8,7 +8,7 @@ read_data data.sigma5
  1 by 1 by 1 MPI processor grid
  reading atoms ...
  25600 atoms
  read_data CPU = 0.032 secs
  read_data CPU = 0.021 secs

pair_style      eam
pair_coeff      * * Ni_u3.eam
@@ -33,58 +33,58 @@ Neighbor list info ...
  ghost atom cutoff = 6.8
  binsize = 3.4, bins = 54 27 6
  2 neighbor lists, perpetual/occasional/extra = 2 0 0
  (1) pair eam, perpetual
  (1) pair eam, perpetual, half/full from (2)
      attributes: half, newton on
      pair build: half/bin/atomonly/newton
      stencil: half/bin/3d/newton
      bin: standard
      pair build: halffull/newton
      stencil: none
      bin: none
  (2) fix orient/eco, perpetual
      attributes: full, newton on, ghost
      pair build: full/bin/ghost
      stencil: full/ghost/bin/3d
      attributes: full, newton on
      pair build: full/bin/atomonly
      stencil: full/bin/3d
      bin: standard
Per MPI rank memory allocation (min/avg/max) = 114 | 114 | 114 Mbytes
Per MPI rank memory allocation (min/avg/max) = 42.15 | 42.15 | 42.15 Mbytes
Step Temp TotEng Press Volume f_eco 
       0          750   -111027.95    15148.458    279755.85 8.7507522e-10 
     100    422.27806   -110928.76    213.95562    285332.65   -0.9445869 
     200    388.82804   -110721.03   -482.03081    286441.76  -0.62401498 
     300    441.96877   -110478.76   -174.17824    286638.76  -0.84438548 
     400    486.68584   -110211.69    60.449185    287024.35   -1.1228851 
     500    530.74819   -109923.82    96.672717    287554.06   -2.2396258 
     600    569.97656   -109623.63   -77.584646    288223.23   -3.1029924 
     700    615.98095   -109318.75   -64.920979    288793.81   -5.0459701 
     800    664.91881   -109021.02   -62.347415    289323.84   -6.1930838 
     900    704.83039   -108741.73    365.88979    289827.26   -9.8340949 
    1000    734.71441   -108502.96    1119.6572       290190   -12.049805 
Loop time of 117.274 on 1 procs for 1000 steps with 25600 atoms
     100     422.2475   -110928.85    214.27204    285332.91   -1.0089186 
     200    388.79514   -110721.02    -481.9574    286443.13  -0.78446905 
     300    441.87285   -110478.56   -174.88288    286640.75   -1.1348357 
     400    486.71094    -110211.6    65.075638    287023.56    -1.495318 
     500    531.12815   -109923.33    97.309245    287552.73   -2.9498072 
     600    569.82126   -109622.61    -85.73157    288229.35   -4.2855812 
     700    615.84724   -109317.16   -52.508824    288799.86   -6.5214427 
     800    666.09015   -109018.62    38.120383    289305.37   -8.4745641 
     900    705.03939   -108738.66    263.39673    289867.87     -12.4514 
    1000    735.59866   -108500.52    242.46405    290353.65   -15.427653 
Loop time of 110.19 on 1 procs for 1000 steps with 25600 atoms

Performance: 0.737 ns/day, 32.576 hours/ns, 8.527 timesteps/s
99.7% CPU use with 1 MPI tasks x 1 OpenMP threads
Performance: 0.784 ns/day, 30.608 hours/ns, 9.075 timesteps/s
99.6% CPU use with 1 MPI tasks x 1 OpenMP threads

MPI task timing breakdown:
Section |  min time  |  avg time  |  max time  |%varavg| %total
---------------------------------------------------------------
Pair    | 27.364     | 27.364     | 27.364     |   0.0 | 23.33
Neigh   | 1.7771     | 1.7771     | 1.7771     |   0.0 |  1.52
Comm    | 0.13003    | 0.13003    | 0.13003    |   0.0 |  0.11
Output  | 0.00078893 | 0.00078893 | 0.00078893 |   0.0 |  0.00
Modify  | 87.918     | 87.918     | 87.918     |   0.0 | 74.97
Other   |            | 0.0842     |            |       |  0.07
Pair    | 27.143     | 27.143     | 27.143     |   0.0 | 24.63
Neigh   | 0.83015    | 0.83015    | 0.83015    |   0.0 |  0.75
Comm    | 0.12639    | 0.12639    | 0.12639    |   0.0 |  0.11
Output  | 0.00078273 | 0.00078273 | 0.00078273 |   0.0 |  0.00
Modify  | 82.003     | 82.003     | 82.003     |   0.0 | 74.42
Other   |            | 0.08703    |            |       |  0.08

Nlocal:    25600 ave 25600 max 25600 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost:    28247 ave 28247 max 28247 min
Nghost:    28259 ave 28259 max 28259 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs:    1.59182e+06 ave 1.59182e+06 max 1.59182e+06 min
Neighs:    1.59326e+06 ave 1.59326e+06 max 1.59326e+06 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs:  3.18365e+06 ave 3.18365e+06 max 3.18365e+06 min
FullNghs:  3.18651e+06 ave 3.18651e+06 max 3.18651e+06 min
Histogram: 1 0 0 0 0 0 0 0 0 0

Total # of neighbors = 3183648
Ave neighs/atom = 124.361
Total # of neighbors = 3186510
Ave neighs/atom = 124.473
Neighbor list builds = 10
Dangerous builds = 0

Please see the log.cite file for references relevant to this simulation

Total wall time: 0:01:57
Total wall time: 0:01:50
+39 −39
Original line number Diff line number Diff line
@@ -8,7 +8,7 @@ read_data data.sigma5
  4 by 1 by 1 MPI processor grid
  reading atoms ...
  25600 atoms
  read_data CPU = 0.022 secs
  read_data CPU = 0.038 secs

pair_style      eam
pair_coeff      * * Ni_u3.eam
@@ -33,58 +33,58 @@ Neighbor list info ...
  ghost atom cutoff = 6.8
  binsize = 3.4, bins = 54 27 6
  2 neighbor lists, perpetual/occasional/extra = 2 0 0
  (1) pair eam, perpetual
  (1) pair eam, perpetual, half/full from (2)
      attributes: half, newton on
      pair build: half/bin/atomonly/newton
      stencil: half/bin/3d/newton
      bin: standard
      pair build: halffull/newton
      stencil: none
      bin: none
  (2) fix orient/eco, perpetual
      attributes: full, newton on, ghost
      pair build: full/bin/ghost
      stencil: full/ghost/bin/3d
      attributes: full, newton on
      pair build: full/bin/atomonly
      stencil: full/bin/3d
      bin: standard
Per MPI rank memory allocation (min/avg/max) = 33.73 | 33.82 | 33.92 Mbytes
Per MPI rank memory allocation (min/avg/max) = 11.69 | 11.7 | 11.72 Mbytes
Step Temp TotEng Press Volume f_eco 
       0          750   -111027.95    15148.458    279755.85 8.749339e-10 
     100     422.2681   -110928.91    213.80039    285331.89  -0.89527716 
     200    388.81794   -110721.17   -481.38349    286440.76  -0.58341827 
     300    441.89999   -110478.99   -175.70299    286638.58  -0.74804169 
     400    486.69333   -110212.01    61.917355    287023.71  -0.83525384 
     500    530.62012   -109924.46     96.49276       287552   -1.7328841 
     600    569.89036    -109624.5   -78.252217    288224.25   -2.3216775 
     700    615.71719   -109319.76   -61.072041    288795.44   -3.7080665 
     800    664.86797   -109021.92   -52.316387    289313.22    -4.603192 
     900    703.88411   -108742.88    329.87308    289838.93   -8.1835743 
    1000    734.57012   -108504.44    1032.3825     290208.8   -9.5778417 
Loop time of 36.3118 on 4 procs for 1000 steps with 25600 atoms
     100     422.2475   -110928.85    214.27204    285332.91   -1.0089186 
     200    388.79514   -110721.02    -481.9574    286443.13  -0.78446905 
     300    441.87285   -110478.56   -174.88288    286640.75   -1.1348357 
     400    486.71094    -110211.6    65.075638    287023.56    -1.495318 
     500    531.12815   -109923.33    97.309245    287552.73   -2.9498072 
     600    569.82126   -109622.61    -85.73157    288229.35   -4.2855812 
     700    615.84724   -109317.16   -52.508824    288799.86   -6.5214427 
     800    666.09015   -109018.62    38.120383    289305.37   -8.4745641 
     900    705.03939   -108738.66    263.39673    289867.87     -12.4514 
    1000    735.59866   -108500.52    242.46405    290353.65   -15.427653 
Loop time of 30.0111 on 4 procs for 1000 steps with 25600 atoms

Performance: 2.379 ns/day, 10.087 hours/ns, 27.539 timesteps/s
96.5% CPU use with 4 MPI tasks x 1 OpenMP threads
Performance: 2.879 ns/day, 8.336 hours/ns, 33.321 timesteps/s
98.0% CPU use with 4 MPI tasks x 1 OpenMP threads

MPI task timing breakdown:
Section |  min time  |  avg time  |  max time  |%varavg| %total
---------------------------------------------------------------
Pair    | 7.2322     | 7.2862     | 7.3582     |   1.7 | 20.07
Neigh   | 0.50594    | 0.50825    | 0.51098    |   0.3 |  1.40
Comm    | 0.20657    | 0.29868    | 0.37614    |  11.6 |  0.82
Output  | 0.00052929 | 0.00080693 | 0.0016012  |   0.0 |  0.00
Modify  | 28.13      | 28.154     | 28.185     |   0.5 | 77.53
Other   |            | 0.06384    |            |       |  0.18
Pair    | 7.1139     | 7.1437     | 7.1983     |   1.2 | 23.80
Neigh   | 0.2101     | 0.21208    | 0.21316    |   0.3 |  0.71
Comm    | 0.15491    | 0.20327    | 0.23586    |   6.8 |  0.68
Output  | 0.00033617 | 0.00064594 | 0.0015616  |   0.0 |  0.00
Modify  | 22.39      | 22.403     | 22.431     |   0.3 | 74.65
Other   |            | 0.04802    |            |       |  0.16

Nlocal:    6400 ave 6429 max 6369 min
Histogram: 1 1 0 0 0 0 0 0 0 2
Nghost:    9867.75 ave 9885 max 9846 min
Histogram: 1 0 0 0 1 0 0 1 0 1
Neighs:    397746 ave 402254 max 393369 min
Histogram: 1 1 0 0 0 0 0 1 0 1
FullNghs:  795492 ave 802928 max 788138 min
Histogram: 1 1 0 0 0 0 0 0 1 1
Nlocal:    6400 ave 6421 max 6384 min
Histogram: 1 1 0 0 0 1 0 0 0 1
Nghost:    9872.5 ave 9892 max 9855 min
Histogram: 1 0 0 1 0 1 0 0 0 1
Neighs:    398314 ave 400737 max 395743 min
Histogram: 1 0 0 1 0 0 0 1 0 1
FullNghs:  796628 ave 801194 max 792566 min
Histogram: 1 0 1 0 0 0 1 0 0 1

Total # of neighbors = 3181966
Ave neighs/atom = 124.296
Total # of neighbors = 3186510
Ave neighs/atom = 124.473
Neighbor list builds = 10
Dangerous builds = 0

Please see the log.cite file for references relevant to this simulation

Total wall time: 0:00:36
Total wall time: 0:00:30