Commit 8e32f623 authored by Steve Plimpton's avatar Steve Plimpton
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reformatted table for per-atom fields

parent a72f034b
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+51 −51
Original line number Diff line number Diff line
@@ -571,56 +571,56 @@ appended to it, which indicate which image of a periodic simulation
box the atom is in.  These may be important to include for some kinds
of analysis.

+------------+---------------------------------------------------------------------------+
| angle      | atom-ID molecule-ID atom-type x y z                                       |
+------------+---------------------------------------------------------------------------+
| atomic     | atom-ID atom-type x y z                                                   |
+------------+---------------------------------------------------------------------------+
| body       | atom-ID atom-type bodyflag mass x y z                                     |
+------------+---------------------------------------------------------------------------+
| bond       | atom-ID molecule-ID atom-type x y z                                       |
+------------+---------------------------------------------------------------------------+
| charge     | atom-ID atom-type q x y z                                                 |
+------------+---------------------------------------------------------------------------+
| dipole     | atom-ID atom-type q x y z mux muy muz                                     |
+------------+---------------------------------------------------------------------------+
| dpd        | atom-ID atom-type theta x y z                                             |
+------------+---------------------------------------------------------------------------+
| edpd       | atom-ID atom-type edpd_temp edpd_cv x y z                                 |
+------------+---------------------------------------------------------------------------+
| electron   | atom-ID atom-type q spin eradius x y z                                    |
+------------+---------------------------------------------------------------------------+
| ellipsoid  | atom-ID atom-type ellipsoidflag density x y z                             |
+------------+---------------------------------------------------------------------------+
| full       | atom-ID molecule-ID atom-type q x y z                                     |
+------------+---------------------------------------------------------------------------+
| line       | atom-ID molecule-ID atom-type lineflag density x y z                      |
+------------+---------------------------------------------------------------------------+
| mdpd       | atom-ID atom-type rho x y z                                               |
+------------+---------------------------------------------------------------------------+
| meso       | atom-ID atom-type rho e cv x y z                                          |
+------------+---------------------------------------------------------------------------+
| molecular  | atom-ID molecule-ID atom-type x y z                                       |
+------------+---------------------------------------------------------------------------+
| peri       | atom-ID atom-type volume density x y z                                    |
+------------+---------------------------------------------------------------------------+
| smd        | atom-ID atom-type molecule volume mass kernel-radius
contact-radius x0 y0 z0 x y z |
+------------+---------------------------------------------------------------------------+
| sphere     | atom-ID atom-type diameter density x y z                                  |
+------------+---------------------------------------------------------------------------+
| spin       | atom-ID atom-type x y z spx spy spz sp                                 |
+------------+---------------------------------------------------------------------------+
| tdpd       | atom-ID atom-type x y z cc1 cc2 ... ccNspecies                            |
+------------+---------------------------------------------------------------------------+
| template   | atom-ID molecule-ID template-index template-atom atom-type x y z          |
+------------+---------------------------------------------------------------------------+
| tri        | atom-ID molecule-ID atom-type triangleflag density x y z                  |
+------------+---------------------------------------------------------------------------+
| wavepacket | atom-ID atom-type charge spin eradius etag cs_re cs_im x y z              |
+------------+---------------------------------------------------------------------------+
| hybrid     | atom-ID atom-type x y z sub-style1 sub-style2 ...                         |
+------------+---------------------------------------------------------------------------+
.. list-table::

   * - angle
     - atom-ID molecule-ID atom-type x y z
   * - atomic
     - atom-ID atom-type x y z
   * - body
     - atom-ID atom-type bodyflag mass x y z
   * - bond
     - atom-ID molecule-ID atom-type x y z
   * - charge
     - atom-type q x y z
   * - dipole
     - atom-ID atom-type q x y z mux muy muz
   * - dpd
     - atom-ID atom-type theta x y z
   * - edpd
     - atom-ID atom-type edpd_temp edpd_cv x y z
   * - electron
     - atom-ID atom-type q spin eradius x y z
   * - ellipsoid
     - atom-ID atom-type ellipsoidflag density x y z
   * - full
     - atom-ID molecule-ID atom-type q x y z
   * - line
     - atom-ID molecule-ID atom-type lineflag density x y z
   * - mdpd
     - atom-ID atom-type rho x y z
   * - molecular
     - atom-ID molecule-ID atom-type x y z
   * - peri
     - atom-ID atom-type volume density x y z
   * - smd
     - atom-ID atom-type molecule volume mass kernel-radius contact-radius x0 y0 z0 x y z
   * - sph
     - atom-ID atom-type rho esph cv x y z
   * - sphere
     - atom-ID atom-type diameter density x y z
   * - spin
     - atom-ID atom-type x y z spx spy spz sp
   * - tdpd
     - atom-ID atom-type x y z cc1 cc2 ... ccNspecies
   * - template
     - atom-ID molecule-ID template-index template-atom atom-type x y z
   * - tri
     - atom-ID molecule-ID atom-type triangleflag density x y z
   * - wavepacket
     - atom-ID atom-type charge spin eradius etag cs_re cs_im x y z
   * - hybrid
     - atom-ID atom-type x y z sub-style1 sub-style2 ...

The per-atom values have these meanings and units, listed alphabetically:

@@ -633,7 +633,7 @@ The per-atom values have these meanings and units, listed alphabetically:
* cv = heat capacity (need units) for SPH particles
* density = density of particle (mass/distance\^3 or mass/distance\^2 or mass/distance units, depending on dimensionality of particle)
* diameter = diameter of spherical atom (distance units)
* e = energy (need units) for SPH particles
* esph = energy (need units) for SPH particles
* edpd_temp = temperature for eDPD particles (temperature units)
* edpd_cv = volumetric heat capacity for eDPD particles (energy/temperature/volume units)
* ellipsoidflag = 1 for ellipsoidal particles, 0 for point particles