Loading doc/src/Build_extras.txt +4 −4 Original line number Diff line number Diff line Loading @@ -563,9 +563,9 @@ file. VORONOI package :h4,link(voronoi) To build with this package, you must download and build the "Voro++ library"_voro_home. library"_voro-home. :link(voro_home,http://math.lbl.gov/voro++) :link(voro-home,http://math.lbl.gov/voro++) [CMake build]: Loading Loading @@ -932,9 +932,9 @@ successfully build on your system. USER-SCAFACOS package :h4,link(user-scafacos) To build with this package, you must download and build the "ScaFaCoS Coulomb solver library"_scafacos_home Coulomb solver library"_scafacos-home :link(scafacos_home,http://www.scafacos.de) :link(scafacos-home,http://www.scafacos.de) [CMake build]: Loading doc/src/Install_mac.txt +2 −1 Original line number Diff line number Diff line Loading @@ -49,7 +49,8 @@ Lennard-Jones benchmark file: % brew test lammps -v :pre If you have problems with the installation you can post issues to "this link"_https://github.com/Homebrew/homebrew-science/issues. "this link"_homebrew. Thanks to Derek Thomas (derekt at cello.t.u-tokyo.ac.jp) for setting up the Homebrew capability. :link(homebrew,https://github.com/Homebrew/homebrew-science/issues) doc/src/Packages_details.txt +10 −10 Original line number Diff line number Diff line Loading @@ -462,10 +462,10 @@ dynamics can be run with LAMMPS using density-functional tight-binding quantum forces calculated by LATTE. More information on LATTE can be found at this web site: "https://github.com/lanl/LATTE"_latte_home. A brief technical "https://github.com/lanl/LATTE"_latte-home. A brief technical description is given with the "fix latte"_fix_latte.html command. :link(latte_home,https://github.com/lanl/LATTE) :link(latte-home,https://github.com/lanl/LATTE) [Authors:] Christian Negre (LANL) and Steve Plimpton (Sandia). LATTE itself is developed at Los Alamos National Laboratory by Marc Loading Loading @@ -668,9 +668,9 @@ MSCG package :link(PKG-mscg),h4 A "fix mscg"_fix_mscg.html command which can parameterize a Multi-Scale Coarse-Graining (MSCG) model using the open-source "MS-CG library"_mscg_home. library"_mscg-home. :link(mscg_home,https://github.com/uchicago-voth/MSCG-release) :link(mscg-home,https://github.com/uchicago-voth/MSCG-release) To use this package you must have the MS-CG library available on your system. Loading Loading @@ -1008,11 +1008,11 @@ VORONOI package :link(PKG-VORONOI),h4 [Contents:] A compute command which calculates the Voronoi tesselation of a collection of atoms by wrapping the "Voro++ library"_voro_home. This collection of atoms by wrapping the "Voro++ library"_voro-home. This can be used to calculate the local volume or each atoms or its near neighbors. :link(voro_home,http://math.lbl.gov/voro++) :link(voro-home,http://math.lbl.gov/voro++) To use this package you must have the Voro++ library available on your system. Loading Loading @@ -1520,7 +1520,7 @@ USER-MEAMC package :link(PKG-USER-MEAMC),h4 [Contents:] A pair style for the modified embedded atom (MEAM) potential translated from the Fortran version in the "MEAM"_MEAM package translated from the Fortran version in the "MEAM"_#PKG-MEAM package to plain C++. In contrast to the MEAM package, no library needs to be compiled and the pair style can be instantiated multiple times. Loading Loading @@ -1601,7 +1601,7 @@ USER-MOLFILE package :link(PKG-USER-MOLFILE),h4 [Contents:] A "dump molfile"_dump_molfile.html command which uses molfile plugins that are bundled with the "VMD"_vmd_home that are bundled with the "VMD"_vmd-home molecular visualization and analysis program, to enable LAMMPS to dump snapshots in formats compatible with various molecular simulation tools. Loading Loading @@ -1653,11 +1653,11 @@ Note that NetCDF files can be directly visualized with the following tools: "Ovito"_ovito (Ovito supports the AMBER convention and the extensions mentioned above) "VMD"_vmd_home "VMD"_vmd-home "AtomEye"_atomeye (the libAtoms version of AtomEye contains a NetCDF reader not present in the standard distribution) :ul :link(ovito,http://www.ovito.org) :link(vmd_home,https://www.ks.uiuc.edu/Research/vmd/) :link(vmd-home,https://www.ks.uiuc.edu/Research/vmd/) :link(atomeye,http://www.libatoms.org) [Author:] Lars Pastewka (Karlsruhe Institute of Technology). Loading doc/src/Packages_user.txt +1 −0 Original line number Diff line number Diff line Loading @@ -74,3 +74,4 @@ Package, Description, Doc page, Example, Library "USER-TALLY"_Packages_details.html#PKG-USER-TALLY, pairwise tally computes,"compute XXX/tally"_compute_tally.html, USER/tally, no "USER-UEF"_Packages_details.html#PKG-USER-UEF, extensional flow,"fix nvt/uef"_fix_nh_uef.html, USER/uef, no "USER-VTK"_Packages_details.html#PKG-USER-VTK, dump output via VTK, "compute vtk"_dump_vtk.html, n/a, ext :tb(ea=c,ca1=l) :link(MOFplus,https://www.mofplus.org/content/show/MOF-FF) doc/src/balance.txt +1 −0 Original line number Diff line number Diff line Loading @@ -516,3 +516,4 @@ appear in {dimstr} for the {shift} style. "fix balance"_fix_balance.html [Default:] none :link(pizza,http://pizza.sandia.gov) Loading
doc/src/Build_extras.txt +4 −4 Original line number Diff line number Diff line Loading @@ -563,9 +563,9 @@ file. VORONOI package :h4,link(voronoi) To build with this package, you must download and build the "Voro++ library"_voro_home. library"_voro-home. :link(voro_home,http://math.lbl.gov/voro++) :link(voro-home,http://math.lbl.gov/voro++) [CMake build]: Loading Loading @@ -932,9 +932,9 @@ successfully build on your system. USER-SCAFACOS package :h4,link(user-scafacos) To build with this package, you must download and build the "ScaFaCoS Coulomb solver library"_scafacos_home Coulomb solver library"_scafacos-home :link(scafacos_home,http://www.scafacos.de) :link(scafacos-home,http://www.scafacos.de) [CMake build]: Loading
doc/src/Install_mac.txt +2 −1 Original line number Diff line number Diff line Loading @@ -49,7 +49,8 @@ Lennard-Jones benchmark file: % brew test lammps -v :pre If you have problems with the installation you can post issues to "this link"_https://github.com/Homebrew/homebrew-science/issues. "this link"_homebrew. Thanks to Derek Thomas (derekt at cello.t.u-tokyo.ac.jp) for setting up the Homebrew capability. :link(homebrew,https://github.com/Homebrew/homebrew-science/issues)
doc/src/Packages_details.txt +10 −10 Original line number Diff line number Diff line Loading @@ -462,10 +462,10 @@ dynamics can be run with LAMMPS using density-functional tight-binding quantum forces calculated by LATTE. More information on LATTE can be found at this web site: "https://github.com/lanl/LATTE"_latte_home. A brief technical "https://github.com/lanl/LATTE"_latte-home. A brief technical description is given with the "fix latte"_fix_latte.html command. :link(latte_home,https://github.com/lanl/LATTE) :link(latte-home,https://github.com/lanl/LATTE) [Authors:] Christian Negre (LANL) and Steve Plimpton (Sandia). LATTE itself is developed at Los Alamos National Laboratory by Marc Loading Loading @@ -668,9 +668,9 @@ MSCG package :link(PKG-mscg),h4 A "fix mscg"_fix_mscg.html command which can parameterize a Multi-Scale Coarse-Graining (MSCG) model using the open-source "MS-CG library"_mscg_home. library"_mscg-home. :link(mscg_home,https://github.com/uchicago-voth/MSCG-release) :link(mscg-home,https://github.com/uchicago-voth/MSCG-release) To use this package you must have the MS-CG library available on your system. Loading Loading @@ -1008,11 +1008,11 @@ VORONOI package :link(PKG-VORONOI),h4 [Contents:] A compute command which calculates the Voronoi tesselation of a collection of atoms by wrapping the "Voro++ library"_voro_home. This collection of atoms by wrapping the "Voro++ library"_voro-home. This can be used to calculate the local volume or each atoms or its near neighbors. :link(voro_home,http://math.lbl.gov/voro++) :link(voro-home,http://math.lbl.gov/voro++) To use this package you must have the Voro++ library available on your system. Loading Loading @@ -1520,7 +1520,7 @@ USER-MEAMC package :link(PKG-USER-MEAMC),h4 [Contents:] A pair style for the modified embedded atom (MEAM) potential translated from the Fortran version in the "MEAM"_MEAM package translated from the Fortran version in the "MEAM"_#PKG-MEAM package to plain C++. In contrast to the MEAM package, no library needs to be compiled and the pair style can be instantiated multiple times. Loading Loading @@ -1601,7 +1601,7 @@ USER-MOLFILE package :link(PKG-USER-MOLFILE),h4 [Contents:] A "dump molfile"_dump_molfile.html command which uses molfile plugins that are bundled with the "VMD"_vmd_home that are bundled with the "VMD"_vmd-home molecular visualization and analysis program, to enable LAMMPS to dump snapshots in formats compatible with various molecular simulation tools. Loading Loading @@ -1653,11 +1653,11 @@ Note that NetCDF files can be directly visualized with the following tools: "Ovito"_ovito (Ovito supports the AMBER convention and the extensions mentioned above) "VMD"_vmd_home "VMD"_vmd-home "AtomEye"_atomeye (the libAtoms version of AtomEye contains a NetCDF reader not present in the standard distribution) :ul :link(ovito,http://www.ovito.org) :link(vmd_home,https://www.ks.uiuc.edu/Research/vmd/) :link(vmd-home,https://www.ks.uiuc.edu/Research/vmd/) :link(atomeye,http://www.libatoms.org) [Author:] Lars Pastewka (Karlsruhe Institute of Technology). Loading
doc/src/Packages_user.txt +1 −0 Original line number Diff line number Diff line Loading @@ -74,3 +74,4 @@ Package, Description, Doc page, Example, Library "USER-TALLY"_Packages_details.html#PKG-USER-TALLY, pairwise tally computes,"compute XXX/tally"_compute_tally.html, USER/tally, no "USER-UEF"_Packages_details.html#PKG-USER-UEF, extensional flow,"fix nvt/uef"_fix_nh_uef.html, USER/uef, no "USER-VTK"_Packages_details.html#PKG-USER-VTK, dump output via VTK, "compute vtk"_dump_vtk.html, n/a, ext :tb(ea=c,ca1=l) :link(MOFplus,https://www.mofplus.org/content/show/MOF-FF)
doc/src/balance.txt +1 −0 Original line number Diff line number Diff line Loading @@ -516,3 +516,4 @@ appear in {dimstr} for the {shift} style. "fix balance"_fix_balance.html [Default:] none :link(pizza,http://pizza.sandia.gov)
