Loading doc/src/fix_hyper_global.txt +4 −5 Original line number Diff line number Diff line Loading @@ -190,11 +190,10 @@ The "fix_modify"_fix_modify.html {energy} option is supported by this fix to add the energy of the bias potential to the the system's potential energy as part of "thermodynamic output"_thermo_style.html. This fix computes a global scalar and global vector of length 11, which can be accessed by various "output commands"_Section_howto.html#howto_15. The scalar is the magnitude of the bias potential (energy units) applied on the current timestep. The vector stores the following quantities: This fix computes a global scalar and global vector of length 11, which can be accessed by various "output commands"_Howto_output.html". The scalar is the magnitude of the bias potential (energy units) applied on the current timestep. The vector stores the following quantities: 1 = boost factor on this step (unitless) 2 = max strain Eij of any bond on this step (unitless) Loading doc/src/fix_hyper_local.txt +4 −4 Original line number Diff line number Diff line Loading @@ -62,7 +62,7 @@ bond-boost form of a bias potential for HD is due to Miron and Fichthorn as described in "(Miron)"_#Mironlhd. To understand this description, you should first read the description of the GHD algorithm on the "fix hyper/global"_fix_hyper/global.html of the GHD algorithm on the "fix hyper/global"_fix_hyper_global.html doc page. This description of LHD builds on the GHD description. The definition of bonds, Eij, and Emax are the same for GHD and LHD. Loading Loading @@ -284,7 +284,7 @@ potential energy as part of "thermodynamic output"_thermo_style.html. This fix computes a global scalar and global vector of length 23, which can be accessed by various "output commands"_Section_howto.html#howto_15. The scalar is the magnitude of commands"_Howto_output.html. The scalar is the magnitude of the bias potential (energy units) applied on the current timestep, summed over all biased bonds. The vector stores the following quantities: Loading Loading @@ -385,8 +385,8 @@ minimization"_minimize.html. [Restrictions:] This fix is part of the REPLICA package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. was built with that package. See the "Build package"_Build_package.html doc page for more info. [Related commands:] Loading doc/src/hyper.txt +1 −1 Original line number Diff line number Diff line Loading @@ -187,6 +187,6 @@ The option defaults are min = 0.1 0.1 40 50 and time = steps. [(Voter2013)] S. Y. Kim, D. Perez, A. F. Voter, J Chem Phys, 139, 144110 (2013). :link(Voter2002prd) :link(Voter2002hd) [(Voter2002)] Voter, Montalenti, Germann, Annual Review of Materials Research 32, 321 (2002). Loading
doc/src/fix_hyper_global.txt +4 −5 Original line number Diff line number Diff line Loading @@ -190,11 +190,10 @@ The "fix_modify"_fix_modify.html {energy} option is supported by this fix to add the energy of the bias potential to the the system's potential energy as part of "thermodynamic output"_thermo_style.html. This fix computes a global scalar and global vector of length 11, which can be accessed by various "output commands"_Section_howto.html#howto_15. The scalar is the magnitude of the bias potential (energy units) applied on the current timestep. The vector stores the following quantities: This fix computes a global scalar and global vector of length 11, which can be accessed by various "output commands"_Howto_output.html". The scalar is the magnitude of the bias potential (energy units) applied on the current timestep. The vector stores the following quantities: 1 = boost factor on this step (unitless) 2 = max strain Eij of any bond on this step (unitless) Loading
doc/src/fix_hyper_local.txt +4 −4 Original line number Diff line number Diff line Loading @@ -62,7 +62,7 @@ bond-boost form of a bias potential for HD is due to Miron and Fichthorn as described in "(Miron)"_#Mironlhd. To understand this description, you should first read the description of the GHD algorithm on the "fix hyper/global"_fix_hyper/global.html of the GHD algorithm on the "fix hyper/global"_fix_hyper_global.html doc page. This description of LHD builds on the GHD description. The definition of bonds, Eij, and Emax are the same for GHD and LHD. Loading Loading @@ -284,7 +284,7 @@ potential energy as part of "thermodynamic output"_thermo_style.html. This fix computes a global scalar and global vector of length 23, which can be accessed by various "output commands"_Section_howto.html#howto_15. The scalar is the magnitude of commands"_Howto_output.html. The scalar is the magnitude of the bias potential (energy units) applied on the current timestep, summed over all biased bonds. The vector stores the following quantities: Loading Loading @@ -385,8 +385,8 @@ minimization"_minimize.html. [Restrictions:] This fix is part of the REPLICA package. It is only enabled if LAMMPS was built with that package. See the "Making LAMMPS"_Section_start.html#start_3 section for more info. was built with that package. See the "Build package"_Build_package.html doc page for more info. [Related commands:] Loading
doc/src/hyper.txt +1 −1 Original line number Diff line number Diff line Loading @@ -187,6 +187,6 @@ The option defaults are min = 0.1 0.1 40 50 and time = steps. [(Voter2013)] S. Y. Kim, D. Perez, A. F. Voter, J Chem Phys, 139, 144110 (2013). :link(Voter2002prd) :link(Voter2002hd) [(Voter2002)] Voter, Montalenti, Germann, Annual Review of Materials Research 32, 321 (2002).
