Commit 746a98d1 authored by sjplimp's avatar sjplimp
Browse files

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@3574 f3b2605a-c512-4ea7-a41b-209d697bcdaa
parent e13c488f
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@@ -346,12 +346,12 @@ of each style or click on the style itself for a full description:
each style or click on the style itself for a full description:
</P>
<DIV ALIGN=center><TABLE  BORDER=1 >
<TR ALIGN="center"><TD ><A HREF = "compute_centro_atom.html">centro/atom</A></TD><TD ><A HREF = "compute_cna_atom.html">cna/atom</A></TD><TD ><A HREF = "compute_com.html">com</A></TD><TD ><A HREF = "compute_coord_atom.html">coord/atom</A></TD><TD ><A HREF = "compute_damage_atom.html">damage/atom</A></TD><TD ><A HREF = "compute_displace_atom.html">displace/atom</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "compute_erotate_asphere.html">erotate/asphere</A></TD><TD ><A HREF = "compute_erotate_sphere.html">erotate/sphere</A></TD><TD ><A HREF = "compute_event_displace.html">event/displace</A></TD><TD ><A HREF = "compute_group_group.html">group/group</A></TD><TD ><A HREF = "compute_gyration.html">gyration</A></TD><TD ><A HREF = "compute_heat_flux.html">heat/flux</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "compute_ke.html">ke</A></TD><TD ><A HREF = "compute_ke_atom.html">ke/atom</A></TD><TD ><A HREF = "compute_msd.html">msd</A></TD><TD ><A HREF = "compute_pe.html">pe</A></TD><TD ><A HREF = "compute_pe_atom.html">pe/atom</A></TD><TD ><A HREF = "compute_pressure.html">pressure</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "compute_property_atom.html">property/atom</A></TD><TD ><A HREF = "compute_property_local.html">property/local</A></TD><TD ><A HREF = "compute_rdf.html">rdf</A></TD><TD ><A HREF = "compute_reduce.html">reduce</A></TD><TD ><A HREF = "compute_reduce.html">reduce/region</A></TD><TD ><A HREF = "compute_stress_atom.html">stress/atom</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "compute_temp.html">temp</A></TD><TD ><A HREF = "compute_temp_asphere.html">temp/asphere</A></TD><TD ><A HREF = "compute_temp_com.html">temp/com</A></TD><TD ><A HREF = "compute_temp_deform.html">temp/deform</A></TD><TD ><A HREF = "compute_temp_partial.html">temp/partial</A></TD><TD ><A HREF = "compute_temp_profile.html">temp/profile</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "compute_temp_ramp.html">temp/ramp</A></TD><TD ><A HREF = "compute_temp_region.html">temp/region</A></TD><TD ><A HREF = "compute_temp_sphere.html">temp/sphere</A> 
<TR ALIGN="center"><TD ><A HREF = "compute_angle_local.html">angle/local</A></TD><TD ><A HREF = "compute_bond_local.html">bond/local</A></TD><TD ><A HREF = "compute_cna_atom.html">cna/atom</A></TD><TD ><A HREF = "compute_com.html">com</A></TD><TD ><A HREF = "compute_coord_atom.html">coord/atom</A></TD><TD ><A HREF = "compute_damage_atom.html">damage/atom</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "compute_displace_atom.html">displace/atom</A></TD><TD ><A HREF = "compute_erotate_asphere.html">erotate/asphere</A></TD><TD ><A HREF = "compute_erotate_sphere.html">erotate/sphere</A></TD><TD ><A HREF = "compute_event_displace.html">event/displace</A></TD><TD ><A HREF = "compute_group_group.html">group/group</A></TD><TD ><A HREF = "compute_gyration.html">gyration</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "compute_heat_flux.html">heat/flux</A></TD><TD ><A HREF = "compute_ke.html">ke</A></TD><TD ><A HREF = "compute_ke_atom.html">ke/atom</A></TD><TD ><A HREF = "compute_msd.html">msd</A></TD><TD ><A HREF = "compute_pe.html">pe</A></TD><TD ><A HREF = "compute_pe_atom.html">pe/atom</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "compute_pressure.html">pressure</A></TD><TD ><A HREF = "compute_property_atom.html">property/atom</A></TD><TD ><A HREF = "compute_property_local.html">property/local</A></TD><TD ><A HREF = "compute_rdf.html">rdf</A></TD><TD ><A HREF = "compute_reduce.html">reduce</A></TD><TD ><A HREF = "compute_reduce.html">reduce/region</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "compute_stress_atom.html">stress/atom</A></TD><TD ><A HREF = "compute_temp.html">temp</A></TD><TD ><A HREF = "compute_temp_asphere.html">temp/asphere</A></TD><TD ><A HREF = "compute_temp_com.html">temp/com</A></TD><TD ><A HREF = "compute_temp_deform.html">temp/deform</A></TD><TD ><A HREF = "compute_temp_partial.html">temp/partial</A></TD></TR>
<TR ALIGN="center"><TD ><A HREF = "compute_temp_profile.html">temp/profile</A></TD><TD ><A HREF = "compute_temp_ramp.html">temp/ramp</A></TD><TD ><A HREF = "compute_temp_region.html">temp/region</A></TD><TD ><A HREF = "compute_temp_sphere.html">temp/sphere</A> 
</TD></TR></TABLE></DIV>

<P>These are compute styles contributed by users, which can be used if
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@@ -459,7 +459,8 @@ Compute styles :h4
See the "compute"_compute.html command for one-line descriptions of
each style or click on the style itself for a full description:

"centro/atom"_compute_centro_atom.html,
"angle/local"_compute_angle_local.html,
"bond/local"_compute_bond_local.html,
"cna/atom"_compute_cna_atom.html,
"com"_compute_com.html,
"coord/atom"_compute_coord_atom.html,
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@@ -1154,19 +1154,21 @@ other output commands.
<H5><A NAME = "compute"></A>Computes that generate values to output 
</H5>
<P>Every <A HREF = "compute.html">compute</A> in LAMMPS produces either global or
per-atom or local quantities.  The quantities can be scalars or
vectors or arrays of data.  The doc page for each compute command
describes what it produces.  These values can be output using
the other commands described in this section.
per-atom or local values.  The values can be scalars or vectors or
arrays of data.  These values can be output using the other commands
described in this section.  The doc page for each compute command
describes what it produces.  Computes that produce per-atom or local
values have the word "atom" or "local" in their style name.  Computes
without the word "atom" or "local" produce global values.
</P>
<H5><A NAME = "fix"></A>Fixes that generate values to output 
</H5>
<P>Some <A HREF = "fix.html">fixes</A> in LAMMPS produces either global or per-atom or
local quantities which can be accessed by other commands.  The
quantities can be scalars or vectors or arrays of data.  The doc page
for each fix command tells whether it produces any output quantities
and describes them.  These values can be output using the other
commands described in this section.
local values which can be accessed by other commands.  The values can
be scalars or vectors or arrays of data.  These values can be output
using the other commands described in this section.  The doc page for
each fix command tells whether it produces any output quantities and
describes them.
</P>
<H5><A NAME = "variable"></A>Variables that generate values to output 
</H5>
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@@ -1145,19 +1145,21 @@ other output commands.
Computes that generate values to output :h5,link(compute)

Every "compute"_compute.html in LAMMPS produces either global or
per-atom or local quantities.  The quantities can be scalars or
vectors or arrays of data.  The doc page for each compute command
describes what it produces.  These values can be output using
the other commands described in this section.
per-atom or local values.  The values can be scalars or vectors or
arrays of data.  These values can be output using the other commands
described in this section.  The doc page for each compute command
describes what it produces.  Computes that produce per-atom or local
values have the word "atom" or "local" in their style name.  Computes
without the word "atom" or "local" produce global values.

Fixes that generate values to output :h5,link(fix)

Some "fixes"_fix.html in LAMMPS produces either global or per-atom or
local quantities which can be accessed by other commands.  The
quantities can be scalars or vectors or arrays of data.  The doc page
for each fix command tells whether it produces any output quantities
and describes them.  These values can be output using the other
commands described in this section.
local values which can be accessed by other commands.  The values can
be scalars or vectors or arrays of data.  These values can be output
using the other commands described in this section.  The doc page for
each fix command tells whether it produces any output quantities and
describes them.

Variables that generate values to output :h5,link(variable)

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@@ -166,7 +166,9 @@ calculations accessed in the various ways described above.
and what it does.  Here is an alphabetic list of compute styles
available in LAMMPS:
</P>
<UL><LI><A HREF = "compute_centro_atom.html">centro/atom</A> - centro-symmetry parameter for each atom
<UL><LI><A HREF = "compute_bond_local.html">angle/local</A> - theta and energy of each angle
<LI><A HREF = "compute_bond_local.html">bond/local</A> - distance and energy of each bond
<LI><A HREF = "compute_centro_atom.html">centro/atom</A> - centro-symmetry parameter for each atom
<LI><A HREF = "compute_cna_atom.html">cna/atom</A> - common neighbor analysis (CNA) for each atom
<LI><A HREF = "compute_com.html">com</A> - center-of-mass of group of atoms
<LI><A HREF = "compute_coord_atom.html">coord/atom</A> - coordination number for each atom
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