replace more raw html code and add syntax highlighting

* :ref:`genindex`

* :ref:`search`

.. raw:: html

   </BODY>

""""""""

.. parsed-literal::

.. code-block:: LAMMPS

   dump d0 all image 100 dump.\*.jpg type type

   dump d1 mobile image 500 snap.\*.png element element ssao yes 4539 0.6

Here are two sample images, rendered as 1024x1024 JPEG files.  Click

to see the full-size images:

.. raw:: html

   <DIV ALIGN=center>

.. image:: JPG/dump1_small.jpg

   :target: JPG/dump1.jpg

   :width: 48%

.. image:: JPG/dump2_small.jpg

   :target: JPG/dump2.jpg

.. raw:: html

   </DIV>

   :width: 48%

Only atoms in the specified group are rendered in the image.  The

:doc:`dump_modify region and thresh <dump_modify>` commands can also

.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A

If other atom attributes are used for the *color* or *diameter*

settings, they are interpreted in the following way.

:doc:`atom_style sphere <atom_style>` define a per-particle radius or

diameter, which can be used as the *diameter* setting.

----------

The various keywords listed above control how the image is rendered.

As listed below, all of the keywords have defaults, most of which you

will likely not need to change.  The :doc:`dump modify <dump_modify>`

also has options specific to the dump image style, particularly for

assigning colors to atoms, bonds, and other image features.

----------

The *atom* keyword allow you to turn off the drawing of all atoms, if

the specified value is *no*\ .  Note that this will not turn off the

drawing of particles that are represented as lines, triangles, or

diameter, e.g. 1.5, which is in whatever distance :doc:`units <units>`

the input script defines, e.g. Angstroms.

----------

The *bond* keyword allows to you to alter how bonds are drawn.  A bond

is only drawn if both atoms in the bond are being drawn due to being

in the specified group and due to other selection criteria

bond is determined by its bond type.  By default all types have

diameter 0.5.  This mapping can be changed by the :doc:`dump_modify bdiam <dump_modify>` command.

----------

The *line* keyword can be used when :doc:`atom_style line <atom_style>`

is used to define particles as line segments, and will draw them as

lines.  If this keyword is not used, such particles will be drawn as

* a) Use the ImageMagick convert program.

  .. parsed-literal::

  .. code-block:: bash

     % convert \*.jpg foo.gif

     % convert -loop 1 \*.ppm foo.mpg

     % convert *.jpg foo.gif

     % convert -loop 1 *.ppm foo.mpg

  Animated GIF files from ImageMagick are not optimized. You can use

  allows extremely flexible encoding and decoding of movies.

  .. parsed-literal::

  .. code-block:: bash

     cat snap.\*.jpg \| ffmpeg -y -f image2pipe -c:v mjpeg -i - -b:v 2000k movie.m4v

     cat snap.\*.ppm \| ffmpeg -y -f image2pipe -c:v ppm -i - -b:v 2400k movie.avi

     cat snap.*.jpg | ffmpeg -y -f image2pipe -c:v mjpeg -i - -b:v 2000k movie.m4v

     cat snap.*.ppm | ffmpeg -y -f image2pipe -c:v ppm -i - -b:v 2400k movie.avi

  Front ends for FFmpeg exist for multiple platforms. For more

  information see the `FFmpeg homepage <http://www.ffmpeg.org/>`_

----------

  movie. Both are available for multiple OSes and support a large

  variety of file formats and decoders.

  .. parsed-literal::

  .. code-block:: bash

     % mplayer foo.mpg

     % ffplay bar.avi

  `animate tool <http://www.sandia.gov/~sjplimp/pizza/doc/animate.html>`_,

  which works directly on a series of image files.

  .. parsed-literal::

  .. code-block:: python

     a = animate("foo\*.jpg")

     a = animate("foo*.jpg")

* d) QuickTime and other Windows- or MacOS-based media players can

  obviously play movie files directly. Similarly for corresponding tools

  additional libraries, purchasing a license, or may not be

  supported.

----------

See the :doc:`Modify <Modify>` doc page for information on how to add

new compute and fix styles to LAMMPS to calculate per-atom quantities

which could then be output into dump files.