Unverified Commit 7088746e authored by Axel Kohlmeyer's avatar Axel Kohlmeyer
Browse files

update logs

parent a1afb8e1
Loading
Loading
Loading
Loading
+18 −18
Original line number Diff line number Diff line
@@ -8,7 +8,7 @@ read_data data.sigma5
  1 by 1 by 1 MPI processor grid
  reading atoms ...
  25600 atoms
  read_data CPU = 0.028 secs
  read_data CPU = 0.032 secs

pair_style      eam
pair_coeff      * * Ni_u3.eam
@@ -33,17 +33,17 @@ Neighbor list info ...
  ghost atom cutoff = 6.8
  binsize = 3.4, bins = 54 27 6
  2 neighbor lists, perpetual/occasional/extra = 2 0 0
  (1) pair eam, perpetual, half/full from (2)
  (1) pair eam, perpetual
      attributes: half, newton on
      pair build: halffull/newton
      stencil: none
      bin: none
      pair build: half/bin/atomonly/newton
      stencil: half/bin/3d/newton
      bin: standard
  (2) fix orient/eco, perpetual
      attributes: full, newton on
      pair build: full/bin/atomonly
      stencil: full/bin/3d
      attributes: full, newton on, ghost
      pair build: full/bin/ghost
      stencil: full/ghost/bin/3d
      bin: standard
Per MPI rank memory allocation (min/avg/max) = 107.4 | 107.4 | 107.4 Mbytes
Per MPI rank memory allocation (min/avg/max) = 114 | 114 | 114 Mbytes
Step Temp TotEng Press Volume f_eco 
       0          750   -111027.95    15148.458    279755.85 8.7507522e-10 
     100    422.27806   -110928.76    213.95562    285332.65   -0.9445869 
@@ -54,22 +54,22 @@ Step Temp TotEng Press Volume f_eco
     600    569.97656   -109623.63   -77.584646    288223.23   -3.1029924 
     700    615.98095   -109318.75   -64.920979    288793.81   -5.0459701 
     800    664.91881   -109021.02   -62.347415    289323.84   -6.1930838 
     900    704.83039   -108741.73     365.8898    289827.26   -9.8340949 
     900    704.83039   -108741.73    365.88979    289827.26   -9.8340949 
    1000    734.71441   -108502.96    1119.6572       290190   -12.049805 
Loop time of 116.807 on 1 procs for 1000 steps with 25600 atoms
Loop time of 117.274 on 1 procs for 1000 steps with 25600 atoms

Performance: 0.740 ns/day, 32.446 hours/ns, 8.561 timesteps/s
Performance: 0.737 ns/day, 32.576 hours/ns, 8.527 timesteps/s
99.7% CPU use with 1 MPI tasks x 1 OpenMP threads

MPI task timing breakdown:
Section |  min time  |  avg time  |  max time  |%varavg| %total
---------------------------------------------------------------
Pair    | 27.131     | 27.131     | 27.131     |   0.0 | 23.23
Neigh   | 0.83119    | 0.83119    | 0.83119    |   0.0 |  0.71
Comm    | 0.13038    | 0.13038    | 0.13038    |   0.0 |  0.11
Output  | 0.00079226 | 0.00079226 | 0.00079226 |   0.0 |  0.00
Modify  | 88.626     | 88.626     | 88.626     |   0.0 | 75.87
Other   |            | 0.08717    |            |       |  0.07
Pair    | 27.364     | 27.364     | 27.364     |   0.0 | 23.33
Neigh   | 1.7771     | 1.7771     | 1.7771     |   0.0 |  1.52
Comm    | 0.13003    | 0.13003    | 0.13003    |   0.0 |  0.11
Output  | 0.00078893 | 0.00078893 | 0.00078893 |   0.0 |  0.00
Modify  | 87.918     | 87.918     | 87.918     |   0.0 | 74.97
Other   |            | 0.0842     |            |       |  0.07

Nlocal:    25600 ave 25600 max 25600 min
Histogram: 1 0 0 0 0 0 0 0 0 0
+21 −21
Original line number Diff line number Diff line
@@ -8,7 +8,7 @@ read_data data.sigma5
  4 by 1 by 1 MPI processor grid
  reading atoms ...
  25600 atoms
  read_data CPU = 0.329 secs
  read_data CPU = 0.022 secs

pair_style      eam
pair_coeff      * * Ni_u3.eam
@@ -33,17 +33,17 @@ Neighbor list info ...
  ghost atom cutoff = 6.8
  binsize = 3.4, bins = 54 27 6
  2 neighbor lists, perpetual/occasional/extra = 2 0 0
  (1) pair eam, perpetual, half/full from (2)
  (1) pair eam, perpetual
      attributes: half, newton on
      pair build: halffull/newton
      stencil: none
      bin: none
      pair build: half/bin/atomonly/newton
      stencil: half/bin/3d/newton
      bin: standard
  (2) fix orient/eco, perpetual
      attributes: full, newton on
      pair build: full/bin/atomonly
      stencil: full/bin/3d
      attributes: full, newton on, ghost
      pair build: full/bin/ghost
      stencil: full/ghost/bin/3d
      bin: standard
Per MPI rank memory allocation (min/avg/max) = 31.41 | 31.5 | 31.6 Mbytes
Per MPI rank memory allocation (min/avg/max) = 33.73 | 33.82 | 33.92 Mbytes
Step Temp TotEng Press Volume f_eco 
       0          750   -111027.95    15148.458    279755.85 8.749339e-10 
     100     422.2681   -110928.91    213.80039    285331.89  -0.89527716 
@@ -56,27 +56,27 @@ Step Temp TotEng Press Volume f_eco
     800    664.86797   -109021.92   -52.316387    289313.22    -4.603192 
     900    703.88411   -108742.88    329.87308    289838.93   -8.1835743 
    1000    734.57012   -108504.44    1032.3825     290208.8   -9.5778417 
Loop time of 42.9059 on 4 procs for 1000 steps with 25600 atoms
Loop time of 36.3118 on 4 procs for 1000 steps with 25600 atoms

Performance: 2.014 ns/day, 11.918 hours/ns, 23.307 timesteps/s
92.9% CPU use with 4 MPI tasks x 1 OpenMP threads
Performance: 2.379 ns/day, 10.087 hours/ns, 27.539 timesteps/s
96.5% CPU use with 4 MPI tasks x 1 OpenMP threads

MPI task timing breakdown:
Section |  min time  |  avg time  |  max time  |%varavg| %total
---------------------------------------------------------------
Pair    | 7.702      | 7.8512     | 8.0322     |   4.3 | 18.30
Neigh   | 0.21251    | 0.22612    | 0.24124    |   2.3 |  0.53
Comm    | 0.58286    | 0.84708    | 1.0824     |  19.5 |  1.97
Output  | 0.040286   | 0.048071   | 0.060272   |   3.8 |  0.11
Modify  | 33.411     | 33.509     | 33.606     |   1.3 | 78.10
Other   |            | 0.4242     |            |       |  0.99
Pair    | 7.2322     | 7.2862     | 7.3582     |   1.7 | 20.07
Neigh   | 0.50594    | 0.50825    | 0.51098    |   0.3 |  1.40
Comm    | 0.20657    | 0.29868    | 0.37614    |  11.6 |  0.82
Output  | 0.00052929 | 0.00080693 | 0.0016012  |   0.0 |  0.00
Modify  | 28.13      | 28.154     | 28.185     |   0.5 | 77.53
Other   |            | 0.06384    |            |       |  0.18

Nlocal:    6400 ave 6429 max 6369 min
Histogram: 1 1 0 0 0 0 0 0 0 2
Nghost:    9867.75 ave 9885 max 9846 min
Histogram: 1 0 0 0 1 0 0 1 0 1
Neighs:    397746 ave 401713 max 393565 min
Histogram: 1 1 0 0 0 0 0 0 1 1
Neighs:    397746 ave 402254 max 393369 min
Histogram: 1 1 0 0 0 0 0 1 0 1
FullNghs:  795492 ave 802928 max 788138 min
Histogram: 1 1 0 0 0 0 0 0 1 1

@@ -87,4 +87,4 @@ Dangerous builds = 0

Please see the log.cite file for references relevant to this simulation

Total wall time: 0:00:43
Total wall time: 0:00:36