Commit 6ce9c2bb authored by sjplimp's avatar sjplimp
Browse files 

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6838 f3b2605a-c512-4ea7-a41b-209d697bcdaa
parent fe1132af

doc/Section_commands.html

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@@ -354,8 +354,9 @@ of each style or click on the style itself for a full description: 
package</A>.

</P>

<DIV ALIGN=center><TABLE  BORDER=1 >

<TR ALIGN="center"><TD ><A HREF = "fix_atc.html">atc</A></TD><TD ><A HREF = "fix_imd.html">imd</A></TD><TD ><A HREF = "fix_langevin_eff.html">langevin/eff</A></TD><TD ><A HREF = "fix_nh_eff.html">nph/eff</A></TD><TD ><A HREF = "fix_nh_eff.html">npt/eff</A></TD><TD ><A HREF = "fix_nve_eff.html">nve/eff</A></TD></TR>

<TR ALIGN="center"><TD ><A HREF = "fix_nh_eff.html">nvt/eff</A></TD><TD ><A HREF = "fix_nvt_sllod_eff.html">nvt/sllod/eff</A></TD><TD ><A HREF = "fix_qeq_reax.html">qeq/reax</A></TD><TD ><A HREF = "fix_smd.html">smd</A></TD><TD ><A HREF = "fix_temp_rescale_eff.html">temp/rescale/eff</A> 

<TR ALIGN="center"><TD ><A HREF = "fix_atc.html">atc</A></TD><TD ><A HREF = "fix_imd.html">imd</A></TD><TD ><A HREF = "fix_langevin_eff.html">langevin/eff</A></TD><TD ><A HREF = "fix_meso.html">meso</A></TD><TD ><A HREF = "fix_meso_stationary.html">meso/stationary</A></TD><TD ><A HREF = "fix_nh_eff.html">nph/eff</A></TD></TR>

<TR ALIGN="center"><TD ><A HREF = "fix_nh_eff.html">npt/eff</A></TD><TD ><A HREF = "fix_nve_eff.html">nve/eff</A></TD><TD ><A HREF = "fix_nh_eff.html">nvt/eff</A></TD><TD ><A HREF = "fix_nvt_sllod_eff.html">nvt/sllod/eff</A></TD><TD ><A HREF = "fix_qeq_reax.html">qeq/reax</A></TD><TD ><A HREF = "fix_smd.html">smd</A></TD></TR>

<TR ALIGN="center"><TD ><A HREF = "fix_temp_rescale_eff.html">temp/rescale/eff</A> 

</TD></TR></TABLE></DIV>



<P>These are accelerated fix styles, which can be used if LAMMPS is
@@ -391,8 +392,8 @@ each style or click on the style itself for a full description: 
package</A>.

</P>

<DIV ALIGN=center><TABLE  BORDER=1 >

<TR ALIGN="center"><TD ><A HREF = "compute_ackland_atom.html">ackland/atom</A></TD><TD ><A HREF = "compute_ke_eff.html">ke/eff</A></TD><TD ><A HREF = "compute_ke_atom_eff.html">ke/atom/eff</A></TD><TD ><A HREF = "compute_temp_eff.html">temp/eff</A></TD><TD ><A HREF = "compute_temp_deform_eff.html">temp/deform/eff</A></TD><TD ><A HREF = "compute_temp_region_eff.html">temp/region/eff</A></TD></TR>

<TR ALIGN="center"><TD ><A HREF = "compute_temp_rotate.html">temp/rotate</A> 

<TR ALIGN="center"><TD ><A HREF = "compute_ackland_atom.html">ackland/atom</A></TD><TD ><A HREF = "compute_ke_eff.html">ke/eff</A></TD><TD ><A HREF = "compute_ke_atom_eff.html">ke/atom/eff</A></TD><TD ><A HREF = "compute_meso_e_atom.html">meso_e/atom</A></TD><TD ><A HREF = "compute_meso_rho_atom.html">meso_rho/atom</A></TD><TD ><A HREF = "compute_meso_t_atom.html">meso_t/atom</A></TD></TR>

<TR ALIGN="center"><TD ><A HREF = "compute_temp_eff.html">temp/eff</A></TD><TD ><A HREF = "compute_temp_deform_eff.html">temp/deform/eff</A></TD><TD ><A HREF = "compute_temp_region_eff.html">temp/region/eff</A></TD><TD ><A HREF = "compute_temp_rotate.html">temp/rotate</A> 

</TD></TR></TABLE></DIV>



<P>These are accelerated compute styles, which can be used if LAMMPS is
@@ -436,7 +437,8 @@ package</A>. 
<DIV ALIGN=center><TABLE  BORDER=1 >

<TR ALIGN="center"><TD ><A HREF = "pair_awpmd.html">awpmd/cut</A></TD><TD ><A HREF = "pair_buck_coul.html">buck/coul</A></TD><TD ><A HREF = "pair_cmm.html">cg/cmm</A></TD><TD ><A HREF = "pair_cmm.html">cg/cmm/coul/cut</A></TD></TR>

<TR ALIGN="center"><TD ><A HREF = "pair_cmm.html">cg/cmm/coul/long</A></TD><TD ><A HREF = "pair_dipole.html">dipole/sf</A></TD><TD ><A HREF = "pair_eam.html">eam/cd</A></TD><TD ><A HREF = "pair_eff.html">eff/cut</A></TD></TR>

<TR ALIGN="center"><TD ><A HREF = "pair_lj_coul.html">lj/coul</A></TD><TD ><A HREF = "pair_lj_sf.html">lj/sf</A></TD><TD ><A HREF = "pair_reax_c.html">reax/c</A> 

<TR ALIGN="center"><TD ><A HREF = "pair_lj_coul.html">lj/coul</A></TD><TD ><A HREF = "pair_lj_sf.html">lj/sf</A></TD><TD ><A HREF = "pair_reax_c.html">reax/c</A><A HREF = "pair_heatconduction.html">sph/heatconduction</A></TD><TD ><A HREF = "pair_idealgas.html">sph/idealgas</A></TD></TR>

<TR ALIGN="center"><TD ><A HREF = "pair_lj.html">sph/lj</A></TD><TD ><A HREF = "pair_rhosum.html">sph/rhosum</A></TD><TD ><A HREF = "pair_taitwater.html">sph/taitwater</A></TD><TD ><A HREF = "pair_taitwater_morris.html">sph/taitwater/morris</A> 

</TD></TR></TABLE></DIV>



<P>These are accelerated pair styles, which can be used if LAMMPS is

doc/Section_commands.txt

+12 −1
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@@ -487,6 +487,8 @@ package"_Section_start.html#start_3. 
"atc"_fix_atc.html,

"imd"_fix_imd.html,

"langevin/eff"_fix_langevin_eff.html,

"meso"_fix_meso.html,

"meso/stationary"_fix_meso_stationary.html,

"nph/eff"_fix_nh_eff.html,

"npt/eff"_fix_nh_eff.html,

"nve/eff"_fix_nve_eff.html,
@@ -578,6 +580,9 @@ package"_Section_start.html#start_3. 
"ackland/atom"_compute_ackland_atom.html,

"ke/eff"_compute_ke_eff.html,

"ke/atom/eff"_compute_ke_atom_eff.html,

"meso_e/atom"_compute_meso_e_atom.html,

"meso_rho/atom"_compute_meso_rho_atom.html,

"meso_t/atom"_compute_meso_t_atom.html,

"temp/eff"_compute_temp_eff.html,

"temp/deform/eff"_compute_temp_deform_eff.html,

"temp/region/eff"_compute_temp_region_eff.html,
@@ -675,7 +680,13 @@ package"_Section_start.html#start_3. 
"eff/cut"_pair_eff.html,

"lj/coul"_pair_lj_coul.html,

"lj/sf"_pair_lj_sf.html,

"reax/c"_pair_reax_c.html :tb(c=4,ea=c)

"reax/c"_pair_reax_c.html

"sph/heatconduction"_pair_heatconduction.html,

"sph/idealgas"_pair_idealgas.html,

"sph/lj"_pair_lj.html,

"sph/rhosum"_pair_rhosum.html,

"sph/taitwater"_pair_taitwater.html,

"sph/taitwater/morris"_pair_taitwater_morris.html :tb(c=4,ea=c)



These are accelerated pair styles, which can be used if LAMMPS is

built with the "appropriate accelerated

doc/compute_meso_e_atom.html

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<HTML>

<CENTER><A HREF = "http://lammps.sandia.gov">LAMMPS WWW Site</A> - <A HREF = "Manual.html">LAMMPS Documentation</A> - <A HREF = "Section_commands.html#comm">LAMMPS Commands</A> 

</CENTER>













<HR>



<H3>compute meso_e/atom command 

</H3>

<P><B>Syntax:</B>

</P>

<PRE>compute ID group-ID meso_e/atom 

</PRE>

<UL><LI>ID, group-ID are documented in <A HREF = "compute.html">compute</A> command

<LI>meso_e/atom = style name of this compute command 

</UL>

<P><B>Examples:</B>

</P>

<PRE>compute 1 all meso_e/atom 

</PRE>

<P><B>Description:</B>

</P>

<P>Define a computation that calculates the per-atom internal energy

for each atom in a group.

</P>

<P>The internal energy is the energy associated with the internal degrees

of freedom of a mesoscopic particles, e.g. a Smooth-Particle

Hydrodynamics particle.

</P>

<P>The value of the internal energy will be 0.0 for atoms not in the

specified compute group.

</P>

<P><B>Output info:</B>

</P>

<P>This compute calculates a per-atom vector, which can be accessed by

any command that uses per-atom values from a compute as input.  See

<A HREF = "Section_howto.html#4_15">this section</A> for an overview of LAMMPS

output options.

</P>

<P>The per-atom vector values will be in energy <A HREF = "units.html">units</A>.

</P>

<P><B>Restrictions:</B> none

</P>

<P><B>Related commands:</B>

</P>

<P><A HREF = "dump.html">dump custom</A>

</P>

<P><B>Default:</B> none

</P>

</HTML>

doc/compute_meso_e_atom.txt

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"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c



:link(lws,http://lammps.sandia.gov)

:link(ld,Manual.html)

:link(lc,Section_commands.html#comm)



:line



compute meso_e/atom command :h3



[Syntax:]



compute ID group-ID meso_e/atom :pre



ID, group-ID are documented in "compute"_compute.html command

meso_e/atom = style name of this compute command :ul



[Examples:]



compute 1 all meso_e/atom :pre



[Description:]



Define a computation that calculates the per-atom internal energy

for each atom in a group.



The internal energy is the energy associated with the internal degrees

of freedom of a mesoscopic particles, e.g. a Smooth-Particle

Hydrodynamics particle.



The value of the internal energy will be 0.0 for atoms not in the

specified compute group.



[Output info:]



This compute calculates a per-atom vector, which can be accessed by

any command that uses per-atom values from a compute as input.  See

"this section"_Section_howto.html#4_15 for an overview of LAMMPS

output options.



The per-atom vector values will be in energy "units"_units.html.



[Restrictions:] none



[Related commands:]



"dump custom"_dump.html



[Default:] none

doc/compute_meso_rho_atom.html

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<HTML>

<CENTER><A HREF = "http://lammps.sandia.gov">LAMMPS WWW Site</A> - <A HREF = "Manual.html">LAMMPS Documentation</A> - <A HREF = "Section_commands.html#comm">LAMMPS Commands</A> 

</CENTER>













<HR>



<H3>compute meso_rho/atom command 

</H3>

<P><B>Syntax:</B>

</P>

<PRE>compute ID group-ID meso_rho/atom 

</PRE>

<UL><LI>ID, group-ID are documented in <A HREF = "compute.html">compute</A> command

<LI>meso_rho/atom = style name of this compute command 

</UL>

<P><B>Examples:</B>

</P>

<PRE>compute 1 all meso_rho/atom 

</PRE>

<P><B>Description:</B>

</P>

<P>Define a computation that calculates the per-atom mesoscopic density

for each atom in a group.

</P>

<P>The mesoscopic density is the mass density of a mesoscopic particle,

calculated by kernel function interpolation using

"pair style sph/rhosum". 

</P>

<P>The value of the mesoscopic density will be 0.0 for atoms not in the

specified compute group.

</P>

<P><B>Output info:</B>

</P>

<P>This compute calculates a per-atom vector, which can be accessed by

any command that uses per-atom values from a compute as input.  See

<A HREF = "Section_howto.html#4_15">this section</A> for an overview of LAMMPS

output options.

</P>

<P>The per-atom vector values will be in mass / volume <A HREF = "units.html">units</A>.

</P>

<P><B>Restrictions:</B> none

</P>

<P><B>Related commands:</B>

</P>

<P><A HREF = "dump.html">dump custom</A>

</P>

<P><B>Default:</B> none

</P>

</HTML>

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