update manual content list for recent updates

body.html

manifolds.html

lammps_commands.html

angle_coeff.html

angle_style.html

atom_modify.html

fix_addforce.html

fix_addtorque.html

fix_append_atoms.html

fix_atc.html

fix_atom_swap.html

fix_ave_atom.html

fix_ave_chunk.html

fix_srd.html

fix_store_force.html

fix_store_state.html

fix_surface_global.html

fix_temp_berendsen.html

fix_temp_csvr.html

fix_temp_rescale.html

pair_awpmd.html

pair_beck.html

pair_body.html

pair_body_rounded_polygon.html

pair_bop.html

pair_born.html

pair_brownian.html

pair_buck.html

pair_buck_long.html

pair_buck6d_coul_gauss.html

pair_charmm.html

pair_class2.html

pair_colloid.html

angle_charmm.html

angle_class2.html

angle_cosine.html

angle_cosine_buck6d.html

angle_cosine_delta.html

angle_cosine_periodic.html

angle_cosine_shift.html

improper_fourier.html

improper_harmonic.html

improper_hybrid.html

improper_inversion_harmonic.html

improper_none.html

improper_ring.html

improper_umbrella.html

improper_zero.html

fix_atc.html

USER/atc/man_add_molecule.html

USER/atc/man_add_species.html

USER/atc/man_atom_element_map.html