Commit 5e35ab25 authored by Christian Negre's avatar Christian Negre
Browse files

fixed sucrose

parent d708e34b
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+63 −0
Original line number Diff line number Diff line
 LAMMPS Description
 
          45 atoms
 
           3 atom types
 
   0.0000000000000000        17.202999999999999      xlo xhi
   0.0000000000000000        18.009000000000000      ylo yhi
   0.0000000000000000        21.643000000000001      zlo zhi
 
 Masses
 
              1   15.9994    
              2   12.01
              3   1.0079
 
 Atoms
 
    1    1    1   0.0   8.62700   8.66700  12.48600
    2    1    1   0.0   9.11200   9.11800  10.27300
    3    1    1   0.0   8.45700  11.33100  10.49000
    4    1    1   0.0  11.72600   8.36500  10.66700
    5    1    1   0.0   8.06500   8.99400   7.93600
    6    1    2   0.0   9.62800   9.07200  11.59100
    7    1    3   0.0   9.90900  10.08300  11.89200
    8    1    2   0.0   9.07000  10.40400   9.64000
    9    1    1   0.0   6.14600  11.61000   8.00500
   10    1    1   0.0  11.07200  10.13000   8.37600
   11    1    1   0.0   6.10200  10.00900  11.62100
   12    1    2   0.0   8.14000  10.29100   8.45100
   13    1    3   0.0   8.49000  10.91200   7.62300
   14    1    1   0.0   7.41500   7.08400  14.43400
   15    1    2   0.0  10.75100   8.07000  11.65100
   16    1    3   0.0  11.24000   8.11800  12.63400
   17    1    2   0.0   7.09000  11.63400  10.17000
   18    1    3   0.0   7.06900  12.69800   9.91100
   19    1    2   0.0   7.97200   7.44200  12.14000
   20    1    3   0.0   7.54700   7.58300  11.13800
   21    1    1   0.0  11.24900   5.73000  11.78600
   22    1    2   0.0  10.26800   6.65900  11.37300
   23    1    3   0.0  10.12300   6.53400  10.29200
   24    1    2   0.0   6.78400  10.79500   8.95500
   25    1    3   0.0   6.12100   9.95500   9.19600
   26    1    2   0.0  10.47500  10.88300   9.39800
   27    1    3   0.0  10.49500  11.92100   9.06900
   28    1    3   0.0  11.09100  10.82000  10.30900
   29    1    2   0.0   8.99100   6.32000  12.11700
   30    1    3   0.0   9.23100   6.01100  13.14400
   31    1    2   0.0   6.86600   7.25300  13.14500
   32    1    3   0.0   6.17700   8.10100  13.15700
   33    1    3   0.0   6.28900   6.35300  12.94300
   34    1    2   0.0   6.24000  11.39400  11.39300
   35    1    3   0.0   6.66500  11.86500  12.28300
   36    1    3   0.0   5.23100  11.78100  11.26000
   37    1    1   0.0   8.34300   5.24100  11.48000
   38    1    3   0.0  12.00100   9.28600  10.78200
   39    1    3   0.0  12.06300   5.97500  11.33000
   40    1    3   0.0   6.99600   9.67600  11.79700
   41    1    3   0.0   7.93700   7.87600  14.60900
   42    1    3   0.0  10.95500   9.19800   8.60700
   43    1    3   0.0   5.94400  11.05900   7.24100
   44    1    3   0.0   7.94900   8.39500   8.68400
   45    1    3   0.0   8.96400   4.50300  11.48800
+1 −1
Original line number Diff line number Diff line
@@ -4,7 +4,7 @@ units metal
atom_style	full
atom_modify     sort 0 0.0    # turn off sorting of the coordinates

read_data       data.sucrose_non_opt.lmp
read_data       data.sucrose.lmp

# replicate system if requested

+3 −2
Original line number Diff line number Diff line
LATTE INPUT FILE
================
#This input file resumes the content of MDcontroller and TBparam/control.in
#The parser will only read it if it's present inside the running folder. 
#The parser will only read it is present inside the running folder. 
#In case this file is not present Latte will read the two files as original.
#The order of the kewords is not important in this file. 
#The order of the keywords is not important in this file. 
#To get a full description of these keywords please see: 
## https://github.com/lanl/LATTE/blob/master/Manual/LATTE_manual.pdf

@@ -12,6 +12,7 @@ CONTROL{
  xControl= 1
  BASISTYPE= NONORTHO
  COORDSFILE= "./coords.dat"
  PARAMPATH= "/home/user/LATTE/TBparam"
  KBT= 0.0
  ENTROPYKIND= 1
  PPOTON= 1