Commit 55022d12 authored by Axel Kohlmeyer's avatar Axel Kohlmeyer
Browse files

replace :l,ule and :l,ole with :l :ule or :l :ole

parent 0d491d48
Loading
Loading
Loading
Loading
+6 −3
Original line number Diff line number Diff line
@@ -2276,7 +2276,8 @@ molecule diffusion rates. :l

As input to special functions of "equal-style
variables"_variable.html, like sum() and max().  E.g. to find the
largest cluster or fastest diffusing molecule. :l,ule
largest cluster or fastest diffusing molecule. :l
:ule

Example calculations with chunks :h5

@@ -2432,7 +2433,8 @@ package, :ulb,l
the adiabatic core-shell method, implemented in the
"CORESHELL"_#howto_26 package, :l
the thermalized Drude dipole method, implemented in the
"USER-DRUDE"_#howto_27 package. :l,ule
"USER-DRUDE"_#howto_27 package. :l
:ule

The fluctuating charge method calculates instantaneous charges on
interacting atoms based on the electronegativity equalization
@@ -2739,7 +2741,8 @@ too much. To avoid this, damping at short range can be done by Thole
functions (for which there are physical grounds). This Thole damping
is applied to the point charges composing the induced dipole (the
charge of the Drude particle and the opposite charge on the core, not
to the total charge of the core atom). :l,ule
to the total charge of the core atom). :l
:ule

A detailed tutorial covering the usage of Drude induced dipoles in
LAMMPS is "available here"_tutorial_drude.html.
+2 −1
Original line number Diff line number Diff line
@@ -241,7 +241,8 @@ Our group has also written and released a separate toolkit called
"Pizza.py"_pizza which provides tools for doing setup, analysis,
plotting, and visualization for LAMMPS simulations.  Pizza.py is
written in "Python"_python and is available for download from "the
Pizza.py WWW site"_pizza. :l,ule
Pizza.py WWW site"_pizza. :l
:ule

:link(pizza,http://www.sandia.gov/~sjplimp/pizza.html)
:link(python,http://www.python.org)
+2 −1
Original line number Diff line number Diff line
@@ -130,7 +130,8 @@ If you add something you think is truly useful and doesn't impact
LAMMPS performance when it isn't used, send an email to the
"developers"_http://lammps.sandia.gov/authors.html.  We might be
interested in adding it to the LAMMPS distribution.  See further
details on this at the bottom of this page. :l,ule
details on this at the bottom of this page. :l
:ule

:line
:line
+2 −1
Original line number Diff line number Diff line
@@ -761,7 +761,8 @@ Add a wrapper method to python/lammps.py for this interface
function. :l

You should now be able to invoke the new interface function from a
Python script.  Isn't ctypes amazing? :l,ule
Python script.  Isn't ctypes amazing? :l
:ule

:line
:line
+4 −2
Original line number Diff line number Diff line
@@ -1208,7 +1208,8 @@ Move to the directory where you have saved lmp_win_no-mpi.exe
(e.g. by typing: cd "Documents"). :l

At the command prompt, type "lmp_win_no-mpi -in in.lj", replacing in.lj
with the name of your LAMMPS input script. :l,ule
with the name of your LAMMPS input script. :l
:ule

For the MPI version, which allows you to run LAMMPS under Windows on 
multiple processors, follow these steps:
@@ -1237,7 +1238,8 @@ In this mode, output may not immediately show up on the screen, so if
your input script takes a long time to execute, you may need to be
patient before the output shows up. :l Alternatively, you can still
use this executable to run on a single processor by typing something
like: "lmp_win_mpi -in in.lj". :l,ule
like: "lmp_win_mpi -in in.lj". :l
:ule

:line

Loading