renaming of variables and command names in USER-SPH (4eb4839f) · Commits · 郑智淋 / lammps

doc/src/atom_style.rst

+6 −6

Original line number	Diff line number	Diff line
		@@ -10,7 +10,7 @@ Syntax

		atom_style style args

		* style = angle or atomic or body or bond or charge or dipole or dpd or edpd or electron or ellipsoid or full or line or mdpd or meso or molecular or peri or smd or sphere or spin or tdpd or tri or template or hybrid
		* style = angle or atomic or body or bond or charge or dipole or dpd or edpd or electron or ellipsoid or full or line or mdpd or molecular or peri or smd or sph or sphere or spin or tdpd or tri or template or hybrid

		.. parsed-literal::

		@@ -103,14 +103,14 @@ quantities.
		+--------------+-----------------------------------------------------+--------------------------------------+
		\| mdpd \| density \| mDPD particles \|
		+--------------+-----------------------------------------------------+--------------------------------------+
		\| meso \| rho, e, cv \| SPH particles \|
		+--------------+-----------------------------------------------------+--------------------------------------+
		\| molecular \| bonds, angles, dihedrals, impropers \| uncharged molecules \|
		+--------------+-----------------------------------------------------+--------------------------------------+
		\| peri \| mass, volume \| mesoscopic Peridynamic models \|
		+--------------+-----------------------------------------------------+--------------------------------------+
		\| smd \| volume, kernel diameter, contact radius, mass \| solid and fluid SPH particles \|
		+--------------+-----------------------------------------------------+--------------------------------------+
		\| sph \| rho, esph, cv \| SPH particles \|
		+--------------+-----------------------------------------------------+--------------------------------------+
		\| sphere \| diameter, mass, angular velocity \| granular models \|
		+--------------+-----------------------------------------------------+--------------------------------------+
		\| spin \| magnetic moment \| system with magnetic particles \|
		@@ -198,8 +198,8 @@ particles which store a set of chemical concentration. An integer
		"cc_species" is required to specify the number of chemical species
		involved in a tDPD system.

		The meso style is for smoothed particle hydrodynamics (SPH)
		particles which store a density (rho), energy (e), and heat capacity
		The sph style is for smoothed particle hydrodynamics (SPH)
		particles which store a density (rho), energy (esph), and heat capacity
		(cv).

		The smd style is for a general formulation of Smooth Particle
		@@ -344,7 +344,7 @@ for energy-conserving dissipative particle dynamics (eDPD), many-body
		dissipative particle dynamics (mDPD), and transport dissipative particle
		dynamics (tDPD), respectively.

		The meso style is part of the USER-SPH package for smoothed particle
		The sph style is part of the USER-SPH package for smoothed particle
		hydrodynamics (SPH). See `this PDF guide <USER/sph/SPH_LAMMPS_userguide.pdf>`_ to using SPH in LAMMPS.

		The spin style is part of the SPIN package.

doc/src/compute.rst

+3 −3

Original line number	Diff line number	Diff line
		@@ -225,9 +225,6 @@ The individual style names on the :doc:`Commands compute <Commands_compute>` doc
		* :doc:`ke/atom/eff <compute_ke_atom_eff>` - per-atom translational and radial kinetic energy in the electron force field model
		* :doc:`ke/eff <compute_ke_eff>` - kinetic energy of a group of nuclei and electrons in the electron force field model
		* :doc:`ke/rigid <compute_ke_rigid>` - translational kinetic energy of rigid bodies
		* :doc:`meso/e/atom <compute_meso_e_atom>` - per-atom internal energy of Smooth-Particle Hydrodynamics atoms
		* :doc:`meso/rho/atom <compute_meso_rho_atom>` - per-atom mesoscopic density of Smooth-Particle Hydrodynamics atoms
		* :doc:`meso/t/atom <compute_meso_t_atom>` - per-atom internal temperature of Smooth-Particle Hydrodynamics atoms
		* :doc:`momentum <compute_momentum>` - translational momentum
		* :doc:`msd <compute_msd>` - mean-squared displacement of group of atoms
		* :doc:`msd/chunk <compute_msd_chunk>` - mean-squared displacement for each chunk
		@@ -279,6 +276,9 @@ The individual style names on the :doc:`Commands compute <Commands_compute>` doc
		* :doc:`sna/atom <compute_sna_atom>` - bispectrum components for each atom
		* :doc:`snad/atom <compute_sna_atom>` - derivative of bispectrum components for each atom
		* :doc:`snav/atom <compute_sna_atom>` - virial contribution from bispectrum components for each atom
		* :doc:`sph/e/atom <compute_sph_e_atom>` - per-atom internal energy of Smooth-Particle Hydrodynamics atoms
		* :doc:`sph/rho/atom <compute_sph_rho_atom>` - per-atom density of Smooth-Particle Hydrodynamics atoms
		* :doc:`sph/t/atom <compute_sph_t_atom>` - per-atom internal temperature of Smooth-Particle Hydrodynamics atoms
		* :doc:`spin <compute_spin>` - magnetic quantities for a system of atoms having spins
		* :doc:`stress/atom <compute_stress_atom>` - stress tensor for each atom
		* :doc:`stress/mop <compute_stress_mop>` - normal components of the local stress tensor using the method of planes

doc/src/compute_meso_e_atom.rst→doc/src/compute_sph_e_atom.rst

+7 −7

Original line number	Diff line number	Diff line
		.. index:: compute meso/e/atom
		.. index:: compute sph/e/atom

		compute meso/e/atom command
		compute sph/e/atom command
		===========================

		Syntax
		@@ -8,17 +8,17 @@ Syntax

		.. parsed-literal::

		compute ID group-ID meso/e/atom
		compute ID group-ID sph/e/atom

		* ID, group-ID are documented in :doc:`compute <compute>` command
		* meso/e/atom = style name of this compute command
		* sph/e/atom = style name of this compute command

		Examples
		""""""""

		.. code-block:: LAMMPS

		compute 1 all meso/e/atom
		compute 1 all sph/e/atom

		Description
		"""""""""""
		@@ -27,8 +27,8 @@ Define a computation that calculates the per-atom internal energy
		for each atom in a group.

		The internal energy is the energy associated with the internal degrees
		of freedom of a mesoscopic particles, e.g. a Smooth-Particle
		Hydrodynamics particle.
		of freedom of an SPH particle, i.e. a Smooth-Particle Hydrodynamics
		particle.

		See `this PDF guide <USER/sph/SPH_LAMMPS_userguide.pdf>`_ to using SPH in
		LAMMPS.

doc/src/compute_meso_rho_atom.rst→doc/src/compute_sph_rho_atom.rst

+10 −11

Original line number	Diff line number	Diff line
		.. index:: compute meso/rho/atom
		.. index:: compute sph/rho/atom

		compute meso/rho/atom command
		compute sph/rho/atom command
		=============================

		Syntax
		@@ -8,32 +8,31 @@ Syntax

		.. parsed-literal::

		compute ID group-ID meso/rho/atom
		compute ID group-ID sph/rho/atom

		* ID, group-ID are documented in :doc:`compute <compute>` command
		* meso/rho/atom = style name of this compute command
		* sph/rho/atom = style name of this compute command

		Examples
		""""""""

		.. code-block:: LAMMPS

		compute 1 all meso/rho/atom
		compute 1 all sph/rho/atom

		Description
		"""""""""""

		Define a computation that calculates the per-atom mesoscopic density
		for each atom in a group.
		Define a computation that calculates the per-atom SPH density for each
		atom in a group, i.e. a Smooth-Particle Hydrodynamics density.

		The mesoscopic density is the mass density of a mesoscopic particle,
		calculated by kernel function interpolation using "pair style
		sph/rhosum".
		The SPH density is the mass density of an SPH particle, calculated by
		kernel function interpolation using "pair style sph/rhosum".

		See `this PDF guide <USER/sph/SPH_LAMMPS_userguide.pdf>`_ to using SPH in
		LAMMPS.

		The value of the mesoscopic density will be 0.0 for atoms not in the
		The value of the SPH density will be 0.0 for atoms not in the
		specified compute group.

		Output info:

doc/src/compute_meso_t_atom.rst→doc/src/compute_sph_t_atom.rst

+7 −7

Original line number	Diff line number	Diff line
		.. index:: compute meso/t/atom
		.. index:: compute sph/t/atom

		compute meso/t/atom command
		compute sph/t/atom command
		===========================

		Syntax
		@@ -8,17 +8,17 @@ Syntax

		.. parsed-literal::

		compute ID group-ID meso/t/atom
		compute ID group-ID sph/t/atom

		* ID, group-ID are documented in :doc:`compute <compute>` command
		* meso/t/atom = style name of this compute command
		* sph/t/atom = style name of this compute command

		Examples
		""""""""

		.. code-block:: LAMMPS

		compute 1 all meso/t/atom
		compute 1 all sph/t/atom

		Description
		"""""""""""
		@@ -27,8 +27,8 @@ Define a computation that calculates the per-atom internal temperature
		for each atom in a group.

		The internal temperature is the ratio of internal energy over the heat
		capacity associated with the internal degrees of freedom of a mesoscopic
		particles, e.g. a Smooth-Particle Hydrodynamics particle.
		capacity associated with the internal degrees of freedom of an SPH
		particles, i.e. a Smooth-Particle Hydrodynamics particle.

		.. math::

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