next chunk of converted html files (4cdb904e) · Commits · 郑智淋 / lammps

doc/src/Howto_viz.rst

+2 −2

Original line number	Diff line number	Diff line
		@@ -19,7 +19,7 @@ A Python-based toolkit distributed by our group can read native LAMMPS
		dump files, including custom dump files with additional columns of
		user-specified atom information, and convert them to various formats
		or pipe them into visualization software directly. See the `Pizza.py WWW site <pizza_>`_ for details. Specifically, Pizza.py can convert
		LAMMPS dump files into PDB, XYZ, `Ensight <ensight_>`_, and VTK formats.
		LAMMPS dump files into PDB, XYZ, `EnSight <ensight_>`_, and VTK formats.
		Pizza.py can pipe LAMMPS dump files directly into the Raster3d and
		RasMol visualization programs. Pizza.py has tools that do interactive
		3d OpenGL visualization and one that creates SVG images of dump file
		@@ -27,6 +27,6 @@ snapshots.

		.. _pizza: https://pizza.sandia.gov

		.. _ensight: https://daac.hpc.mil/software/EnSight/
		.. _ensight: https://www.ansys.com/products/fluids/ansys-ensight

		.. _atomeye: http://li.mit.edu/Archive/Graphics/A/

+1 −1

Original line number	Diff line number	Diff line
		@@ -12,7 +12,7 @@ Syntax

		* AtC fixID = ID of :doc:`fix atc <fix_atc>` instance
		* extrinsic electron_integration = name of the AtC sub-command
		* integration_type = explicit or implicit or steadydescriptor
		* integration_type = explicit or implicit or steady
		* num_subcycle_steps = number of subcycle steps for the electron time integration (optional)

0 → 100644

+44 −0

Original line number	Diff line number	Diff line
		.. index:: fix_modify AtC equilibrium_start

		fix_modify AtC equilibrium_start command
		========================================

		Syntax
		""""""

		.. parsed-literal::

		fix_modify <AtC fixID> equilibrium_start <on\|off>

		* AtC fixID = ID of :doc:`fix atc <fix_atc>` instance
		* equilibrium_start = name of the AtC sub-command
		* exponential or step or no_filter = select type of filter

		Examples
		""""""""

		.. code-block:: LAMMPS

		fix_modify AtC equilibrium_start on

		Description
		"""""""""""

		Starts filtered calculations assuming they start in equilibrium,
		i.e. perfect finite element force balance.

		Restrictions
		""""""""""""

		Only for use with these specific transfers: thermal, two_temperature

		Related AtC commands
		""""""""""""""""""""
		- :ref:`fix_modify AtC command overview <atc_fix_modify>`
		- :doc:`fix_modify AtC filter <atc_time_filter>`
		- :doc:`fix_modify AtC filter scale <atc_filter_scale>`

		Default
		"""""""

		None.

0 → 100644

+45 −0

Original line number	Diff line number	Diff line
		.. index:: fix_modify AtC extrinsic exchange

		fix_modify AtC extrinsic exchange command
		=========================================

		Syntax
		""""""

		.. parsed-literal::

		fix_modify <AtC fixID> extrinsic exchange <on\|off>

		* AtC fixID = ID of :doc:`fix atc <fix_atc>` instance
		* extrinsic exchange = name of the AtC sub-command
		* on or off = set state of energy exchange


		Examples
		""""""""

		.. code-block:: LAMMPS

		fix_modify AtC extrinsic exchange on

		Description
		"""""""""""

		Switches energy exchange between the MD system and the electron system
		on or off

		Restrictions
		""""""""""""

		For use only with the two_temperature type of the AtC fix (see
		:doc:`fix atc <fix_atc>` command)

		Related AtC commands
		""""""""""""""""""""

		- :ref:`fix_modify AtC command overview <atc_fix_modify>`

		Default
		"""""""

		on

0 → 100644

+44 −0

Original line number	Diff line number	Diff line
		.. index:: fix_modify AtC filter scale

		fix_modify AtC filter scale command
		===================================

		Syntax
		""""""

		.. parsed-literal::

		fix_modify <AtC fixID> filter scale <scale>

		* AtC fixID = ID of :doc:`fix atc <fix_atc>` instance
		* filter scale = name of the AtC sub-command
		* scale = characteristic times scale of the filter

		Examples
		""""""""

		.. code-block:: LAMMPS

		fix_modify AtC filter scale 10.0

		Description
		"""""""""""

		Sets the time scale for MD dynamics filter to construct a more
		appropriate continuous field.

		Restrictions
		""""""""""""

		Only for use with these specific transfers: thermal, two_temperature

		Related AtC commands
		""""""""""""""""""""
		- :ref:`fix_modify AtC command overview <atc_fix_modify>`
		- :doc:`fix_modify AtC filter <atc_time_filter>`
		- :doc:`fix_modify AtC filter type <atc_filter_type>`

		Default
		"""""""

		0.0