Merge pull request #1214 from akohlmey/collected-small-changes

  endif()

endforeach()

# packages that need defines set

foreach(PKG MPIIO)

  if(PKG_${PKG})

    add_definitions(-DLMP_${PKG})

  endif()

endforeach()

# dedicated check for entire contents of accelerator packages

foreach(PKG ${ACCEL_PACKAGES})

  set(${PKG}_SOURCES_DIR ${LAMMPS_SOURCE_DIR}/${PKG})

  * new style docs should be added to the "overview" files in

  `doc/src/Commands_*.txt`, `doc/src/{fixes,computes,pairs,bonds,...}.txt`

  and `doc/src/lammps.book`

  * new files in packages should be added to `src/.gitignore`

  * check whether manual cleanly translates with `make html` and `make pdf`

  * check spelling of manual with `make spelling` in doc folder

  * new source files in packages should be added to `src/.gitignore`

  * removed or renamed files in packages should be added to `src/Purge.list`

  * C++ source files should use C++ style include files for accessing

  C-library APIs, e.g. `#include <cstdlib>` instead of `#include <stdlib.h>`.

you can browse them locally on your system.  Type "make" from the

lammps/doc dir to see other options.

NOTE: You can also download a tarball of the documention for the

NOTE: You can also download a tarball of the documentation for the

current LAMMPS version (HTML and PDF files), from the website

"download page"_http://lammps.sandia.gov/download.html.

long as the shared PLUMED library is ABI-compatible. The third linkage

mode is "runtime" which allows to switch the PLUMED kernel at runtime

between different variants through setting the PLUMED_KERNEL environment

varible, which has to point to the location of the libplumedKernel.so

variable, which has to point to the location of the libplumedKernel.so

dynamical shared object, which is then loaded at runtime. This is

particularly convenient for doing PLUMED development and comparing

multiple PLUMED versions without having to recompile the hosting MD

-D PLUMED_MODE=value       # Linkage mode for PLUMED, value = static (default), shared, or runtime :pre

If DOWNLOAD_PLUMED is set to "yes", the PLUMED library will be

downloaded (the version of that is hardcoded to a vetted version of

downloaded (the version of that is hard-coded to a vetted version of

PLUMED, usually a recent stable release version) and built inside the

CMake build directory.  If DOWNLOAD_PLUMED is set to "no" (the default),

CMake will try to detect an installed version of PLUMED and link to

created in lib/plumed to point into the location of the PLUMED build to

use and also a new file lib/plumed/Makefile.lammps is created with

settings suitable for LAMMPS to compile and link PLUMED in the desired

linkage mode. After this step is compleded, you can install the

linkage mode. After this step is completed, you can install the

USER-PLUMED package and compile LAMMPS in the usual manner:

make yes-user-plumed 

portable, and thus set to be the default.

If you want to change the linkage mode, you have to re-run "make

lib-plumed" with the desired settings [and] do a reinstall if the

lib-plumed" with the desired settings [and] do a re-install if the

USER-PLUMED package with "make yes-user-plumed" to update the required

makefile settings with the changes in the lib/plumed folder.

[Makefile.machine setting]:

LMP_INC = -DLAMMPS_SMALLBIG    # or -DLAMMPS_BIGBIG or -DLAMMPS_SMALLSMALL :pre

                               # default is LAMMMPS_SMALLBIG if not specified

                               # default is LAMMPS_SMALLBIG if not specified

[CMake and make info]:

The default "smallbig" setting allows for simulations with: