Loading doc/Section_tools.html +16 −0 Original line number Diff line number Diff line Loading @@ -57,6 +57,7 @@ own sub-directories with their own Makefiles. <LI><A HREF = "#micelle">micelle2d</A> <LI><A HREF = "#msi">msi2lmp</A> <LI><A HREF = "#pymol">pymol_asphere</A> <LI><A HREF = "#pythontools">python</A> <LI><A HREF = "#restart">restart2data</A> <LI><A HREF = "#thermo_extract">thermo_extract</A> <LI><A HREF = "#vim">vim</A> Loading Loading @@ -274,6 +275,21 @@ examples directory within pymol_asphere for more information. </P> <HR> <H4><A NAME = "pythontools"></A>python tools </H4> <P>The python sub-directory contains several Python scripts that perform common LAMMPS post-processing tasks, like </P> <UL><LI>extract thermodynamic info from a log file as columns of numbers <LI>plot two columns of thermodynamic info from a log file <LI>sort the snapshots in a dump file by atom ID <LI>convert dump files into XYZ, CFG, or PDB format for viz by other packages </UL> <P>These are simple scripts built on <A HREF = "http://www.cs.sandia.gov/~sjplimp/pizza.html">Pizza.py</A> modules. See the README for more info on Pizza.py and how to use these scripts. </P> <HR> <H4><A NAME = "restart"></A>restart2data tool </H4> <P>The file restart2data.cpp converts a binary LAMMPS restart file into Loading doc/Section_tools.txt +16 −0 Original line number Diff line number Diff line Loading @@ -53,6 +53,7 @@ own sub-directories with their own Makefiles. "micelle2d"_#micelle "msi2lmp"_#msi "pymol_asphere"_#pymol "python"_#pythontools "restart2data"_#restart "thermo_extract"_#thermo_extract "vim"_#vim Loading Loading @@ -270,6 +271,21 @@ This tool was written by Mike Brown at Sandia. :line python tool :h4,link(pythontools) The python sub-directory contains several Python scripts that perform common LAMMPS post-processing tasks, like extract thermodynamic info from a log file as columns of numbers plot two columns of thermodynamic info from a log file sort the snapshots in a dump file by atom ID convert dump files into XYZ, CFG, or PDB format for viz by other packages :ul These are simple scripts built on "Pizza.py"_pizza modules. See the README for more info on Pizza.py and how to use these scripts. :line restart2data tool :h4,link(restart) The file restart2data.cpp converts a binary LAMMPS restart file into Loading Loading
doc/Section_tools.html +16 −0 Original line number Diff line number Diff line Loading @@ -57,6 +57,7 @@ own sub-directories with their own Makefiles. <LI><A HREF = "#micelle">micelle2d</A> <LI><A HREF = "#msi">msi2lmp</A> <LI><A HREF = "#pymol">pymol_asphere</A> <LI><A HREF = "#pythontools">python</A> <LI><A HREF = "#restart">restart2data</A> <LI><A HREF = "#thermo_extract">thermo_extract</A> <LI><A HREF = "#vim">vim</A> Loading Loading @@ -274,6 +275,21 @@ examples directory within pymol_asphere for more information. </P> <HR> <H4><A NAME = "pythontools"></A>python tools </H4> <P>The python sub-directory contains several Python scripts that perform common LAMMPS post-processing tasks, like </P> <UL><LI>extract thermodynamic info from a log file as columns of numbers <LI>plot two columns of thermodynamic info from a log file <LI>sort the snapshots in a dump file by atom ID <LI>convert dump files into XYZ, CFG, or PDB format for viz by other packages </UL> <P>These are simple scripts built on <A HREF = "http://www.cs.sandia.gov/~sjplimp/pizza.html">Pizza.py</A> modules. See the README for more info on Pizza.py and how to use these scripts. </P> <HR> <H4><A NAME = "restart"></A>restart2data tool </H4> <P>The file restart2data.cpp converts a binary LAMMPS restart file into Loading
doc/Section_tools.txt +16 −0 Original line number Diff line number Diff line Loading @@ -53,6 +53,7 @@ own sub-directories with their own Makefiles. "micelle2d"_#micelle "msi2lmp"_#msi "pymol_asphere"_#pymol "python"_#pythontools "restart2data"_#restart "thermo_extract"_#thermo_extract "vim"_#vim Loading Loading @@ -270,6 +271,21 @@ This tool was written by Mike Brown at Sandia. :line python tool :h4,link(pythontools) The python sub-directory contains several Python scripts that perform common LAMMPS post-processing tasks, like extract thermodynamic info from a log file as columns of numbers plot two columns of thermodynamic info from a log file sort the snapshots in a dump file by atom ID convert dump files into XYZ, CFG, or PDB format for viz by other packages :ul These are simple scripts built on "Pizza.py"_pizza modules. See the README for more info on Pizza.py and how to use these scripts. :line restart2data tool :h4,link(restart) The file restart2data.cpp converts a binary LAMMPS restart file into Loading
