Commit 1bdd915a authored by sjplimp's avatar sjplimp
Browse files 

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13466 f3b2605a-c512-4ea7-a41b-209d697bcdaa
parent a32bfebe

doc/fix_adapt_fep.html

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@@ -246,9 +246,6 @@ over the course of a 1000-step simulation: 
<PRE>variable size equal ramp(1.0,0.1)

fix 1 center adapt 10 atom diameter * v_size 

</PRE>

<P>When the <A HREF = "run_style.html">run style</A> is <I>respa</I>, this fix changes

parameters only on the outer loop (largest) timesteps.

</P>

<P>For <A HREF = "run_style.html">rRESPA time integration</A>, this fix changes

parameters on the outermost rRESPA level.

</P>

doc/fix_adapt_fep.txt

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@@ -232,9 +232,6 @@ over the course of a 1000-step simulation: 
variable size equal ramp(1.0,0.1)

fix 1 center adapt 10 atom diameter * v_size :pre



When the "run style"_run_style.html is {respa}, this fix changes

parameters only on the outer loop (largest) timesteps.



For "rRESPA time integration"_run_style.html, this fix changes

parameters on the outermost rRESPA level.

doc/fix_gle.html

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@@ -13,7 +13,7 @@ 
</H3>

<P><B>Syntax:</B>

</P>

<PRE>fix ID id-group gle Ns Tstart Tstop seed Amatrix <B>noneq Cmatrix</B> <B>every stride</B> 

<PRE>fix ID id-group gle Ns Tstart Tstop seed Amatrix [noneq Cmatrix] [every stride] 

</PRE>

<UL><LI>ID, group-ID are documented in <A HREF = "fix.html">fix</A> command

doc/fix_gle.txt

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@@ -10,7 +10,7 @@ fix gle command :h3 


[Syntax:]



fix ID id-group gle Ns Tstart Tstop seed Amatrix [noneq Cmatrix] [every stride] :pre

fix ID id-group gle Ns Tstart Tstop seed Amatrix \[noneq Cmatrix\] \[every stride\] :pre



ID, group-ID are documented in "fix"_fix.html command :ulb,l

gle = style name of this fix command :l

doc/fix_langevin.html

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@@ -230,6 +230,10 @@ the particles. As described below, this energy can then be printed 
out or added to the potential energy of the system to monitor energy

conservation.

</P>

<P>IMPORTANT NOTE: this accumulated energy does NOT include kinetic

energy removed by the <I>zero</I> flag. LAMMPS will print a warning when

both options are active.

</P>

<P>The keyword <I>zero</I> can be used to eliminate drift due to the

thermostat. Because the random forces on different atoms are

independent, they do not sum exactly to zero.  As a result, this fix

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