Merge branch 'master' into collected-small-changes (12de1762) · Commits · 郑智淋 / lammps

doc/src/Commands_all.rst

+6 −6

Changes for doc/src/Commands_all.rst: 6 added lines, 6 removed lines.
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		@@ -46,7 +46,8 @@ An alphabetic list of all general LAMMPS commands.
		* :doc:`dimension <dimension>`
		* :doc:`displace_atoms <displace_atoms>`
		* :doc:`dump <dump>`
		* :doc:`dump adios <dump_adios>`
		* :doc:`dump atom/adios <dump_adios>`
		* :doc:`dump custom/adios <dump_adios>`
		* :doc:`dump image <dump_image>`
		* :doc:`dump movie <dump_image>`
		* :doc:`dump netcdf <dump_netcdf>`
		@@ -131,11 +132,10 @@ An alphabetic list of all general LAMMPS commands.
		* :doc:`units <units>`
		* :doc:`variable <variable>`
		* :doc:`velocity <velocity>`
		* :doc:`write_coeff <write_coeff>`
		* :doc:`write_data <write_data>`
		* :doc:`write_dump <write_dump>`
		* :doc:`write_restart <write_restart>`
		*
		* :doc:`write\_coeff <write_coeff>`
		* :doc:`write\_data <write_data>`
		* :doc:`write\_dump <write_dump>`
		* :doc:`write\_restart <write_restart>`
		*
		*
		*

doc/src/Commands_fix.rst

+1 −0

Changes for doc/src/Commands_fix.rst: 1 added line, 0 removed lines.
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		@@ -156,6 +156,7 @@ OPT.
		* :doc:`precession/spin <fix_precession_spin>`
		* :doc:`press/berendsen <fix_press_berendsen>`
		* :doc:`print <fix_print>`
		* :doc:`propel/self <fix_propel_self>`
		* :doc:`property/atom (k) <fix_property_atom>`
		* :doc:`python/invoke <fix_python_invoke>`
		* :doc:`python/move <fix_python_move>`

doc/src/Packages_details.rst

+7 −2

Changes for doc/src/Packages_details.rst: 7 added lines, 2 removed lines.
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		@@ -1096,8 +1096,9 @@ USER-ADIOS package
		Contents:

		ADIOS is a high-performance I/O library. This package implements the
		dump "atom/adios" and dump "custom/adios" commands to write data using
		the ADIOS library.
		:doc:`dump atom/adios <dump_adios>`, :doc:`dump custom/adios <dump_adios>` and
		:doc:`read_dump ... format adios <read_dump>`
		commands to write and read data using the ADIOS library.

		Authors: Norbert Podhorszki (ORNL) from the ADIOS developer team.

		@@ -1111,6 +1112,10 @@ This package has :ref:`specific installation instructions <user-adios>` on the :
		* src/USER-ADIOS/README
		* examples/USER/adios
		* https://github.com/ornladios/ADIOS2
		* :doc:`dump atom/adios <dump_adios>`
		* :doc:`dump custom/adios <dump_adios>`
		* :doc:`read_dump <read_dump>`



		----------

doc/src/dump.rst

+9 −5

Changes for doc/src/dump.rst: 9 added lines, 5 removed lines.
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		@@ -21,8 +21,11 @@ dump command
		:doc:`dump movie <dump_image>` command
		======================================

		:doc:`dump adios <dump_adios>` command
		======================================
		:doc:`dump atom/adios <dump_adios>` command
		===========================================

		:doc:`dump custom/adios <dump_adios>` command
		=============================================

		Syntax
		""""""
		@@ -45,12 +48,12 @@ Syntax
		atom args = none
		atom/gz args = none
		atom/mpiio args = none
		atom/adios args = none, discussed on :doc:`dump adios <dump_adios>` doc page
		atom/adios args = none, discussed on :doc:`dump atom/adios <dump_adios>` doc page
		cfg args = same as custom args, see below
		cfg/gz args = same as custom args, see below
		cfg/mpiio args = same as custom args, see below
		custom\ , custom/gz\ , custom/mpiio args = see below
		custom/adios args = same as custom args, discussed on :doc:`dump adios <dump_adios>` doc page
		custom/adios args = same as custom args, discussed on :doc:`dump custom/adios <dump_adios>` doc page
		dcd args = none
		h5md args = discussed on :doc:`dump h5md <dump_h5md>` doc page
		image args = discussed on :doc:`dump image <dump_image>` doc page
		@@ -713,7 +716,8 @@ LAMMPS was built with that package. See the :doc:`Build package <Build_package>
		Related commands
		""""""""""""""""

		:doc:`dump adios <dump_adios>` :doc:`dump h5md <dump_h5md>`, :doc:`dump image <dump_image>`,
		:doc:`dump atom/adios <dump_adios>`, :doc:`dump custom/adios <dump_adios>`,
		:doc:`dump h5md <dump_h5md>`, :doc:`dump image <dump_image>`,
		:doc:`dump molfile <dump_molfile>`, :doc:`dump\_modify <dump_modify>`,
		:doc:`undump <undump>`

doc/src/dump_adios.rst

+4 −3

Changes for doc/src/dump_adios.rst: 4 added lines, 3 removed lines.
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		.. index:: dump atoms/adios
		.. index:: dump atom/adios
		.. index:: dump custom/adios

		dump atoms/adios command
		dump atom/adios command
		=========================

		dump custom/adios command
		@@ -12,7 +13,7 @@ Syntax

		.. parsed-literal::

		dump ID group-ID atoms/adios N file.bp
		dump ID group-ID atom/adios N file.bp

		dump ID group-ID custom/adios N file.bp args

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