"Combined the package structure for the scripts, made the corresponding changes"

# $2 command line argument corresponds to packages to instrument

# $3 command line argument corresponds class path

java -jar ../lib/com.gzoltar-0.0.11-jar-with-dependencies.jar $1 $2 $3 

java -jar ../../lib/com.gzoltar-0.0.11-jar-with-dependencies.jar $1 $2 $3 

# This script removes the files that the run-tacoco and clean-tacoco scripts create

# the user should re-compile the tacoco dir after cleaning; mvn compile or mvn clean package

cd ../tacoco

cd ../../tacoco

rm cp.txt jacoco.exec *.json

rm -r target

rm -r lib