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| SPA3G-package | SPA3G |
| KERNEL | Calculate Kernel Matrix |
| PROJECT | Column-wise Mean Centered |
| Score.Test.Interact | Implement the gene-centric gene-gene interaction effect test for H0: |
| Score.Test.Overall | Implement the overall genetic effect test for H0: |
| SPA | run SPA |
| SPA.example | An example data set |
| SPA3G | SPA3G |
| TRACE | Returns trace of a square matrix |
| TT | Returns the trace of the product of two matrices |
| WEIGHT_maf | Returns minor allele frequency based weights |