CREAM {CREAM} | R Documentation |
CREAM is the main function for CORE identification
CREAM(in_path, WScutoff = 1.5, MinLength = 1000, peakNumMin = 2)
in_path |
Path to the input file (The file inclusing the functional regions) Note. You have to make sure that there is no overlapping regions within the input file |
WScutoff |
Threshold used to identify WS within distribution of maximum distance between peaks for each order of CORE |
MinLength |
Criteria for the minimum number of functional regions in the input file |
peakNumMin |
Minimum number of peaks for CORE identification |
Bed file including the identified COREs
CREAM(system.file("extdata", "A549_Chr21.bed", package = "CREAM"), MinLength = 1000, peakNumMin = 2)