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| BayHap-package | Bayesian analysis of haplotype association using MCMC |
| autocorr | Autocorrelation Function |
| BayHap | Bayesian analysis of haplotype association using MCMC |
| bayhapFreq | Estimation of haplotype frequencies |
| bayhapReg | Bayesian analysis of haplotype association using Markov Chain Monte Carlo |
| BIC | Bayesian Information Criterion |
| conv.test | Heidelberger and Welch Convergence Diagnostics |
| correl | Correlation Matrix |
| haplo.prior | Prior values for model parameters |
| plotACF | Plot autocorrelation function |
| plotDensity | Plot Density Functions |
| plotFreq | Plot acf, running mean, density functions and trace histories |
| plotReg | Plot acf, running mean, density functions and trace histories |
| plotRmean | Plot Running Mean of the Parameter Estimation |
| plotTrace | Plot Trace Histories |
| print.freq | Estimation of haplotype frequencies |
| print.reg | Bayesian analysis of haplotype association using Markov Chain Monte Carlo |
| setupData | Check and prepares original data to be analyzed |