CreateIndelRealignmentTargets
CreateReferencePositionPair
CreatingRecalibrationTable
computeMismatchingPositions
contigsToAlignmentRecordsConversionFn
contigsToAlignmentRecordsDatasetConversionFn
contigsToContigsConversionFn
contigsToCoverageConversionFn
contigsToCoverageDatasetConversionFn
contigsToFeaturesConversionFn
contigsToFeaturesDatasetConversionFn
contigsToFragmentsConversionFn
contigsToFragmentsDatasetConversionFn
contigsToGenotypesConversionFn
contigsToGenotypesDatasetConversionFn
contigsToVariantContextConversionFn
contigsToVariantsConversionFn
contigsToVariantsDatasetConversionFn
coverageToAlignmentRecordsConversionFn
coverageToAlignmentRecordsDatasetConversionFn
coverageToContigsConversionFn
coverageToContigsDatasetConversionFn
coverageToCoverageConversionFn
coverageToFeaturesConversionFn
coverageToFeaturesDatasetConversionFn
coverageToFragmentsConversionFn
coverageToFragmentsDatasetConversionFn
coverageToGenotypesConversionFn
coverageToGenotypesDatasetConversionFn
coverageToVariantContextConversionFn
coverageToVariantsConversionFn
coverageToVariantsDatasetConversionFn