Create and return a new metrics listener for the specified Spark context.
Create and return a new metrics listener for the specified Spark context.
Spark context.
Return a new metrics listener for the specified Spark context.
Genotype headers.
Print VCF FORMAT field attributes for the specified genotypes.
Print VCF FORMAT field attributes for the specified genotypes.
Sequence of genotypes.
Sequence of VCF FORMAT field attribute keys.
Sequence of VCF header lines.
Print VCF FORMAT field attributes for genotypes in the specified rdd up to the limit.
Print VCF FORMAT field attributes for genotypes in the specified rdd up to the limit.
GenotypeRDD.
Sequence of VCF FORMAT field attribute keys.
Number of genotypes to print VCF FORMAT field attribute values for. Defaults to 10.
Print genotype filter values for the specified genotypes.
Print genotype filter values for the specified genotypes.
Sequence of VCF header lines.
Print genotype filter values for genotypes in the specified rdd up to the limit.
Print genotype filter values for genotypes in the specified rdd up to the limit.
GenotypeRDD.
Number of genotypes to print genotype filter values for. Defaults to 10.
Print VCF INFO field attributes for the specified variants.
Print VCF INFO field attributes for the specified variants.
Sequence of variants.
Sequence of VCF INFO field attribute keys.
Sequence of VCF header lines.
Print VCF INFO field attributes for variants in the specified rdd up to the limit.
Print VCF INFO field attributes for variants in the specified rdd up to the limit.
VariantRDD.
Sequence of VCF INFO field attribute keys.
Number of variants to print VCF INFO field attribute values for. Defaults to 10.
Print metrics gathered by the specified metrics listener.
Print metrics gathered by the specified metrics listener.
Total execution time, in ns.
Metrics listener.
Print metrics gathered by the specified metrics listener.
Print metrics gathered by the specified metrics listener.
Metrics listener.
Print filter values for the specified variants.
Print filter values for the specified variants.
Sequence of variants to print filter values for.
Sequence of VCF header lines.
Print filter values for variants in the specified rdd up to the limit.
Print filter values for variants in the specified rdd up to the limit.
VariantRDD.
Number of variants to print filter values for. Defaults to 10.
Variant headers.
Utility methods for use in adam-shell.