OutFormatter that reads streaming VCF.
OutFormatter that reads streaming VCF. Java-friendly constructor.
Hadoop configuration.
Accumulator for VCF header lines.
OutFormatter that reads streaming VCF.
OutFormatter that reads streaming VCF. Java-friendly no-arg constructor.
Hadoop configuration.
Hadoop configuration.
Optional accumulator for VCF header lines.
Hadoop configuration.
Optional accumulator for VCF header lines.
Reads VariantContexts from an input stream.
Reads VariantContexts from an input stream. Autodetects VCF format.
An InputStream connected to a process we are piping from.
Returns an iterator of AlignmentRecords read from the stream.
OutFormatter that reads streaming VCF.
Hadoop configuration.
Optional accumulator for VCF header lines.