Package

org.bdgenomics.adam.rdd

feature

Permalink

package feature

Visibility
  1. Public
  2. All

Type Members

  1. case class BEDInFormatter extends InFormatter[Feature, Feature, FeatureRDD, BEDInFormatter] with Product with Serializable

    Permalink
  2. case class BEDOutFormatter() extends OutFormatter[Feature] with Product with Serializable

    Permalink

    OutFormatter that reads streaming BED format.

  3. abstract class CoverageRDD extends GenomicDataset[Coverage, Coverage, CoverageRDD]

    Permalink
  4. case class DatasetBoundCoverageRDD extends CoverageRDD with DatasetBoundGenomicDataset[Coverage, Coverage, CoverageRDD] with Product with Serializable

    Permalink

    A Dataset containing Coverage data.

  5. case class DatasetBoundFeatureRDD extends FeatureRDD with DatasetBoundGenomicDataset[Feature, Feature, FeatureRDD] with Product with Serializable

    Permalink
  6. sealed abstract class FeatureRDD extends AvroGenomicDataset[Feature, Feature, FeatureRDD]

    Permalink
  7. case class GFF3InFormatter extends InFormatter[Feature, Feature, FeatureRDD, GFF3InFormatter] with Product with Serializable

    Permalink
  8. case class GFF3OutFormatter() extends OutFormatter[Feature] with Product with Serializable

    Permalink

    OutFormatter that reads streaming GFF3 format.

  9. case class GTFInFormatter extends InFormatter[Feature, Feature, FeatureRDD, GTFInFormatter] with Product with Serializable

    Permalink
  10. case class GTFOutFormatter() extends OutFormatter[Feature] with Product with Serializable

    Permalink

    OutFormatter that reads streaming GTF format.

  11. case class NarrowPeakInFormatter extends InFormatter[Feature, Feature, FeatureRDD, NarrowPeakInFormatter] with Product with Serializable

    Permalink
  12. case class NarrowPeakOutFormatter() extends OutFormatter[Feature] with Product with Serializable

    Permalink

    OutFormatter that reads streaming NarrowPeak format.

  13. case class ParquetUnboundCoverageRDD extends CoverageRDD with Product with Serializable

    Permalink
  14. case class ParquetUnboundFeatureRDD extends FeatureRDD with Product with Serializable

    Permalink
  15. case class RDDBoundCoverageRDD extends CoverageRDD with Product with Serializable

    Permalink

    An RDD containing Coverage data.

  16. case class RDDBoundFeatureRDD extends FeatureRDD with Product with Serializable

    Permalink

Value Members

  1. object BEDInFormatter extends InFormatterCompanion[Feature, Feature, FeatureRDD, BEDInFormatter] with Serializable

    Permalink

    InFormatter companion that builds a BEDInFormatter to write features in BED format to a pipe.

  2. object FeatureRDD

    Permalink
  3. object GFF3InFormatter extends InFormatterCompanion[Feature, Feature, FeatureRDD, GFF3InFormatter] with Serializable

    Permalink

    InFormatter companion that builds a GFF3InFormatter to write features in GFF3 format to a pipe.

  4. object GTFInFormatter extends InFormatterCompanion[Feature, Feature, FeatureRDD, GTFInFormatter] with Serializable

    Permalink

    InFormatter companion that builds a GTFInFormatter to write features in GTF format to a pipe.

  5. object NarrowPeakInFormatter extends InFormatterCompanion[Feature, Feature, FeatureRDD, NarrowPeakInFormatter] with Serializable

    Permalink

    InFormatter companion that builds a NarrowPeakInFormatter to write features in NarrowPeak format to a pipe.

Ungrouped