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createRecordReader(InputSplit, TaskAttemptContext) - Method in class org.bdgenomics.adam.io.InterleavedFastqInputFormat
Creates the new record reader that underlies this input format.
createRecordReader(InputSplit, TaskAttemptContext) - Method in class org.bdgenomics.adam.io.SingleFastqInputFormat
Creates the new record reader that underlies this input format.

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FastqInputFormat - Class in org.bdgenomics.adam.io
 
FastqInputFormat() - Constructor for class org.bdgenomics.adam.io.FastqInputFormat
 

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InterleavedFastqInputFormat - Class in org.bdgenomics.adam.io
This class is a Hadoop reader for "interleaved fastq" -- that is, fastq with paired reads in the same file, interleaved, rather than in two separate files.
InterleavedFastqInputFormat() - Constructor for class org.bdgenomics.adam.io.InterleavedFastqInputFormat
 
isSplitable(JobContext, Path) - Method in class org.bdgenomics.adam.io.FastqInputFormat
Checks to see if the file we are looking at is splittable.

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org.bdgenomics.adam.io - package org.bdgenomics.adam.io
 

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SingleFastqInputFormat - Class in org.bdgenomics.adam.io
This class is a Hadoop reader for single read fastq.
SingleFastqInputFormat() - Constructor for class org.bdgenomics.adam.io.SingleFastqInputFormat
 
splittable - Variable in class org.bdgenomics.adam.io.FastqInputFormat
 
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