InFormatter
rdd
InFormatterCompanion
rdd
IncorrectMDTagException
read
IndexedFastaFile
util
InnerBroadcastJoin
Timers
InnerShuffleJoin
Timers
InnerShuffleRegionJoin
rdd
InnerShuffleRegionJoinAndGroupByLeft
rdd
InnerTreeRegionJoin
rdd
InnerTreeRegionJoinAndGroupByRight
rdd
InputStreamWithDecoder
serialization
InstrumentedADAMBAMOutputFormat
read
InstrumentedADAMBAMOutputFormatHeaderLess
read
InstrumentedADAMCRAMOutputFormat
read
InstrumentedADAMCRAMOutputFormatHeaderLess
read
InstrumentedADAMSAMOutputFormat
read
InstrumentedADAMSAMOutputFormatHeaderLess
read
Integer
TagType
InterleavedFASTQInFormatter
fragment
InterleavedFastqInputFormat
io
InvertingRecalibrationTable
Timers
id
ProcessingStep
in
AvroSerializer
index
NucleotideContigFragmentField SliceField NucleotideContigFragment
indexRecordStart
TwoBitFile
inferredInsertSize
AlignmentRecordField AlignmentRecord
infoHeaderLines
DefaultHeaderLines
instrument
FragmentField Fragment
instrumentation
adam
intersection
ReferenceRegion
invert
GenomeBins
io
adam
isAdjacent
ReferenceRegion
isCompatibleWith
SequenceDictionary
isDeletion
RichVariant
isEmpty
RecordGroupDictionary SequenceDictionary
isInsertion
RichVariant
isMatch
MdTag
isMismatchAtReferencePosition
RichAlignmentRecord
isMultipleNucleotideVariant
RichVariant
isNearby
ReferenceRegion
isSingleNucleotideVariant
RichVariant
isSorted
GenomicRDD
isSplitable
FastqInputFormat