{% load custom_tags %} {% load static %} {% load crispy_forms_tags %} {% include "chlamdb/header.html" %} {% if not menu %}
{% else %}
{% endif %}
{% include "chlamdb/menu.html" %}
Orthogroup annotation

Orthogroup:{{og}}


{% if not valid_id %}

{% else %}

{% include "chlamdb/homologs.html" %}
{% include "chlamdb/orthogroup_conservation.html" %}

Phylogeny of {{og}} {{root}}


Phylogeny of the RefSeq best hits of {{og}}

Orthogroup content: {{n_homologues}} members

Help

This page summarizes the annotation of all members of the orthologous group {{og}}.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

{% for row in gene_annotations %} {% endfor %}
# Gene name Occurence
{{row.0}} {{row.1}} {{row.2}}

Product

{% for row in product_annotations %} {% endfor %}
# Product Occurence
{{row.0}} {{row.1}} {{row.2}}
{% if pfam_def|length > 0 %}

PFAM domains

{% for val in pfam_def %} {% endfor %}
Domain Domain definition N. occurrences
{{val.0|safe}} {{val.2}} {{val.1}}
{% endif %}
{% if cog_entries|length > 0 %}

COG annotation(s)

{% for h in cog_header %} {% endfor %} {% for row in cog_entries %} {% for entry in row %} {% endfor %} {% endfor %}
{{h|safe}}
{{ entry|safe }}
{% endif %} {% if ko_entries|length > 0 %}

Kegg Ortholog annotation(s)

{% for entry in ko_header %} {% endfor %} {% for row in ko_entries %} {% for e in row %} {% endfor %} {% endfor %}
{{entry|safe}}
{{e|safe}}
{% endif %} {% if length_distrib %}

Protein length

{% if single_length %} {% else %} {% endif %}
Unique protein length {{prot_length}}
Min length {{min_protein_length}}
Max length {{max_protein_length}}
Mean length (sd) {{mean_protein_length}} ({{std_protein_length}})
Median length {{median_protein_length}}

Protein length distribution

{{html_plot_prot_length|safe}}
{% endif %} {% if optional2status|keyvalue:"BLAST_swissprot" %}
{% if n_swissprot_hits != 0 %}

Annotations of the {{n_swissprot_hits}} SwissProt hits

{% for swissprot in reviewed %} {% endfor %}
Annotation Number of occurrences
{{swissprot.0}} {{swissprot.1}}
{% else %}

No swissprot homolog

{% endif %}
{% endif %}
{% endif %}