{% load static %} {% include "chlamdb/header.html" %}
{% include "chlamdb/menu.html" %} {% include "chlamdb/extract_nav_tabs_template.html" with type=type active_tab="pan" %}

Accumulation/rarefaction plot of {% if type == 'Pfam' %} Pfam domains {% elif type == 'COG' %} COG categories {% elif type == 'interpro'%} Interpro Entries. {% elif type == 'EC' %} EC numbers. Based on PRIAM data. Partial EC are not considered. {% elif type == 'ko' %} Kegg orthologous groups (KO) {% elif type == 'orthology' %} orthologous groups {% endif %}

{% csrf_token %} {{ form.as_p }}
{% if envoi %}
Help to interpret the results

This plot shows the relationship between the number of {{type_txt}} and the number of genomes considered.
The green and the blue lines are both based on a single random permutation of the selected genomes. The green line represent the total number of {{type_txt}} present in the first n genomes of the permutation. The blue represents the number of {{type_txt}} shared by the first n genomes of the permutation.
The red line shows the number of {{type_txt}} present in exactly n genomes. This plot do not depend on a permutation and it is possible to click on the points to get more detailed information.

{% endif %}
{% include "chlamdb/style_menu.html" %}