{% load static %} {% load custom_tags %} {% load crispy_forms_tags %} {% include "chlamdb/header.html" %}
{% include "chlamdb/menu.html" %} {% include "chlamdb/extract_nav_tabs_template.html" with type="EC" active_tab="det" %}

Help

Get list of EC numbers shared between genomes selected in panel A and absent in genomes of panel B. EC based on PRIAM prediction and not Kegg Oorthologs data. Kegg data will replace PRIAM in the near future.
Reference: one of the genome in panel A can be chosen as reference for display the result EC list on a circular map of the genome. Click on "show on circular map" to generate the circos map. Corresponding locus are highlighted in pink.
Missing data: if more than one panel A genome (include) is selected, possibility to tolerate missing data in 1 up to 10 genomes (in order to get EC present in at least x out of the y genomes selected in panel A).

{% csrf_token %} {% crispy form %}
{% if wrong_n_missing%}

Help

You cannot set a number of missing data bigger than the number of included genomes

{% elif no_match%}

No match

{% endif %} {% if envoi_extract %}

Number of EC: {{ sum_group }}

{% for value in match_groups_data %} {% for value_2 in value.2 %} {% endfor %} {% endfor %}
EC number Description KEGG Map Pathway Category Pathway description present in (/{{include|length}} included genomes) freq complete database (/{{max_n}} genomes)
{{value.0}} {{value.1}}{{value_2}}{{value.3}} {{value.4}}

Locus annotation

{%for values in locus2annot%} {% with locus_tag2cog_name|keyvalue:values.2 as name %} {% if name == '-' %} {% else %} {% endif %} {%endwith%} {% with locus_tag2ko|keyvalue:values.2 as oneko %} {% if oneko == '-' %} {% else %} {% with ko2ko_pathways|keyvalue:oneko as name %} {% if name == '-' %} {% else %} {% endif %} {%endwith%} {% with ko2ko_modules|keyvalue:oneko as name %} {% if name == '-' %} {% else %} {% endif %} {%endwith%} {% endif %} {%endwith%} {% with locus2interpro|keyvalue:values.2 as interpro_data %} {%endfor%}
Orthogroup Locus C COGn KO Pathways Modules Interpro Gene nH nG TM SP Product
{{values.0}} {{values.1}} {{values.2}} {{locus_tag2cog_catego|keyvalue:values.2}}{{locus_tag2cog_name|keyvalue:values.2}}{{locus_tag2cog_name|keyvalue:values.2}}{{locus_tag2ko|keyvalue:values.2}} - -{{locus_tag2ko|keyvalue:values.2}}-{{name|safe}}-{{name|safe}} {% for one_interpro in interpro_data %} {% if one_interpro.0 != '-' %} {{one_interpro.0}} / {%else%} {{one_interpro.0}} {%endif%} {{one_interpro.1}}
{% endfor %} {%endwith%}
{{values.7}} {{values.8}} {{values.9}} {{values.10}} {{values.11}} {{values.12}}
{% endif %}
{% include "chlamdb/style_menu.html" %}