{% load static %} {% load static %} {% load custom_tags %} {% get_static_prefix as STATIC_PREFIX %} {% include "chlamdb/header.html" %}

Litterature search

{% if paperblast_data %}

Help

PaperBLAST provides a database of protein sequences that are linked to scientific articles.
These links come from automated text searches against the articles in EuropePMC and from manually-curated information from GeneRIF, UniProtKB/Swiss-Prot, BRENDA, CAZy (as made available by dbCAN), CharProtDB, MetaCyc, EcoCyc, REBASE, and the Fitness Browser.
The table below report the top 20 best hits of the considered protein in the PaperBLAST database. Each of the top 20 hit can be associated to one or multiple references to the litterature, which is why multiple rows can have the same "hit" name. Identity values were extracted from BLASTp results.

{% for row in paperblast_data %} {% if "VIM" in row.0 %} {% elif "WP_" in row.0 %} {% elif "XP_" in row.0 %} {% elif "YP_" in row.0 %} {% elif "NP_" in row.0 %} {% elif row.0|length == 6 %} {% else %} {% endif %} {% endfor %}
Hit Organism PaperBLAST description Identity Paper title Journal Year Number of proteins
{{row.0}}{{row.0}}{{row.0}}{{row.0}}{{row.0}}{{row.0}}{{row.0}}{{row.2}} {{row.3}} {{row.6}} {{row.10}} {{row.11}} {{row.12}} {{ pmid2n_associated_proteins|keyvalue:row.9 }}
{% endif %} {% if string_data and not paperblast_data %}

Help

The STRING database provides links to the litterature based on the automated analysis of scientific publications (textmining). References to the litterature were retrieved from STRING for the top 20 best BLAST hits in the STRING database.

{% for row in string_data %} {% endfor %}
Hit Organism STRING Description Identity Paper title Journal Year Number of proteins
{{row.0}} {{row.3}} {{row.4}} {{row.5}} {{row.9}} {{row.10}} {{row.11}} {{ pmid2n_associated_proteins_string|keyvalue:row.8 }}
{% elif string_data and paperblast_data %}

Help

The STRING database provides links to the litterature based on the automated analysis of scientific publications (textmining). References to the litterature were retrieved from STRING for the top 20 best BLAST hits in the STRING database.

{% for row in string_data %} {% endfor %}
Hit Organism STRING description Identity Paper title Journal Year Number of proteins
{{row.0}} {{row.1}} {{row.2}} {{row.5}} {{row.9}} {{row.10}} {{row.11}} {{ pmid2n_associated_proteins_string|keyvalue:row.8 }}
{% else %} {% endif %}
{% include "chlamdb/style_menu.html" %}