{% load static %} {% include "chlamdb/header.html" %}
{% include "chlamdb/menu.html" %}

Search term: {{search_term}}. Search limited to 100 hits

Acronyms

S strand
nH total number of homologues
nG number of genomes in which at least one homologous protein is present
TM Transmmembrane domains
SP Signl peptide
{% load static %} {% for values in search_result %} {% endfor %}
Acc. type Accession Orthogroup Locus Start Stop S. Gene nH nG TM SP Product Organism
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{% include "chlamdb/style_menu.html" %}

No match!

The following protein accessions are recognised:

Name Example
Genbank locus tag wcw_1594
Genbank protein accession ADI38940.1
RefSeq locus tag WCW_RS07680
RefSeq protein accession WP_013182646.1
UniParc accession UPI0001D5C1DD
UniProtKB-Accession D6YS95
UniProtKB-ID D6YS95_WADCW

Accessions from KEGG, COG, Pfam and InterPro can also be searched:

Accession type Example Description
KEGG ortholog K00844 hexokinase [EC:2.7.1.1]
COG COG0333 Ribosomal protein L32
PFAM PF06723 MreB/Mbl protein
InterPro IPR004753 Cell shape determining protein MreB
KEGG modules M00023 Amino acid metabolism
Kegg pathways map00400 Phenylalanine, tyrosine and tryptophan biosynthesis

It's also possible to seach for a gene or product name

It's also possible to browse genomes tables from links listed in the home page table (column: Browse online)

A BLAST interface is also available for homology search

{% load static %} {% for values in locus_list %} {% endfor %}
Acc. type Accession Orthogroup Locus Start Stop S. Gene nH nG TM SP Product Organism
{{values.0}} {{values.1}} {{values.2}} {{values.3}} {{values.4}} {{values.5}} {{values.6}} {{values.7}} {{values.8}} {{values.9}} {{values.10}} {{values.11}} {{values.12}} {{values.13}} {{values.14}}