{% load static %} {% include "chlamdb/header.html" %}
{% include "chlamdb/menu.html" %}

Blast a sequence of interest against the genomes of the database


Help

ffn CDS nucleotide sequences
fnagenome sequence(s)
faaprotein sequences
blastndna sequence vs dna sequences database
blastpprotein sequence vs protein sequences database
blastxtranslated dna sequence vs protein sequences database
tblastnprotein sequence vs translated nucleotide sequences database
× Note! The blast input can be either an amino-acid or a nucleotide sequence, or a set (one or more) of fasta sequences.
{% csrf_token %} {{ form.as_p }}
{% if wrong_format %}

{{ error_title }}

{{ error_message }}
{% endif %} {% if envoi %}
Help to interpret the results

The blast search generates two output pages according to the search parameters set up in the analysis:
Details: this page showa the graphical overview of blast hits identified on the genome(s) of interest colored according to the max score or E-value. Each hit is listed in the following table. It reportes the alignment scores and the contigs or locus tags of the match (Note that the locus tag is clickable and redirects you to a comphensive locus tag overview). {% if phylo_distrib %}
Phylogenetic distribution: Heatmap of the amino-acid/nucleotide identity of the best hit for each taxa. {% endif %}

{% include "chlamdb/venn_template_orthogroups.html" with series=series description_dico=orthogroup2description %}
{% if phylo_distrib %}
{% endif %}
{% if js_out %}
{% endif %} {% if blast_result %}

Result

{% autoescape off %}{{blast_result}}{% endautoescape %}
{% elif blast_no_hits %}

No hits

{% elif blast_err %}

Error

									 {% autoescape off %}{{blast_err}}{% endautoescape %}
									
{% endif %}
{% if phylo_distrib %} {% endif %}
{% endif %}