{% load static %} {% load custom_tags %} {% include "chlamdb/header.html" %} {% if not menu %}
{% else %}
{% endif %}
{% if menu %} {% include "chlamdb/menu.html" %} {% endif %} {% if not valid_id %}

{% else %}

{% include "chlamdb/homologs.html" %}

Distribution of the homologs in the orthogroup {{og_id|safe}}

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of {{og_id|safe}}

Download SVG Download alignment file

Phylogeny of the RefSeq best hits of {{og_id|safe}}

{% for entry in swissprot_headers %} {% endfor %} {% for values in swissprot_blast_data %} {% for entry in values %} {% if forloop.counter0 == 0 %} {% else %} {% endif %} {% endfor %} {% endfor %}
{{entry}}
{{entry|safe}}{{entry|safe}}

  • Number of RefSeq hits: {{n_refseq_homologs}}
{% for entry in refseq_headers %} {% endfor %} {% for values in blast_data %} {% for entry in values %} {% endfor %} {% endfor %}
{{entry}}
{{entry|safe}}

General

{% if sequence_type == "CDS" %} {% else %} {% endif %}
Source {{organism}}
Locus tag {{locus_tag}}
Feature type {{feature_type}}
Gene {{gene}}
Product {{prot}}
Location {{start}} - {{end}} (strand: {{strand}})
Length{{nucl_length}} (nucleotides) / {{length}} (amino acids){{nucl_length}} (nucleotides)
{% if sequence_type == "CDS" %}

Orthology

Orthogroup {{og_id|safe}}
Orthogroup size {{og_size}}
N. genomes {{og_num_genomes}}
{% endif %}

Genomic region

{%if ko_pathway_data or ko_module_data %}

Pathways/Modules

{%if ko_pathway_data %} {% for pathway in ko_pathway_data %} {% endfor %} {% endif %} {%if ko_module_data %} {% for module in ko_module_data %} {% endfor %} {% endif %}
Pathway {{pathway.1}} {{pathway.2}} {{pathway.3}}
Module {{module.0}} {{module.1}} {{module.2}}
{% endif %} {% if cog_entries|length > 0 %}

COG annotation(s)

{% for h in cog_header %} {% endfor %} {% for row in cog_entries %} {% for entry in row %} {% endfor %} {% endfor %}
{{h|safe}}
{{ entry|safe }}
{% endif %} {% if pfam_def|length > 0 %}

Domains

{% for val in pfam_def %} {% endfor %}
{{val.0|safe}} {{val.1}}
{% endif %} {% if ko_entries|length > 0 %}

Kegg Ortholog annotation(s)

{% for entry in ko_header %} {% endfor %} {% for row in ko_entries %} {% for e in row %} {% endfor %} {% endfor %}
{{entry|safe}}
{{e|safe}}
{% endif %}
{% if sequence_type == "CDS" %}

Protein Sequence

{{translation}}

{% endif %}

Flanking regions ( +/- flanking 50bp)

{{ seq|safe }}

{% endif %}
{% csrf_token %} {% include "chlamdb/style_menu.html" %}