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Get list of EC numbers shared between genomes selected in panel A and absent in genomes of panel B. EC based on PRIAM prediction and not Kegg Oorthologs data. Kegg data will replace PRIAM in the near future.
Reference: one of the genome in panel A can be chosen as reference for display the result EC list on a circular map of the genome. Click on "show on circular map" to generate the circos map. Corresponding locus are highlighted in pink.
Missing data: if more than one panel A genome (include) is selected, possibility to tolerate missing data in 1 up to 10 genomes (in order to get EC present in at least x out of the y genomes selected in panel A).
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You cannot set a number of missing data bigger than the number of included genomes
No match
Number of EC: {{ sum_group }}
EC number | Description | KEGG Map | Pathway Category | Pathway description | present in (/{{include|length}} included genomes) | freq complete database (/{{max_n}} genomes) | |
---|---|---|---|---|---|---|---|
{{value.0}} | {{value.1}} | {% for value_2 in value.2 %}{{value_2}} | {% endfor %}{{value.3}} | {{value.4}} |
Locus annotation
Orthogroup | Locus | C | COGn | KO | Pathways | Modules | Interpro | Gene | nH | nG | TM | SP | Product | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
{{values.0}} | {{values.1}} | {{values.2}} | {{locus_tag2cog_catego|keyvalue:values.2}} | {% with locus_tag2cog_name|keyvalue:values.2 as name %} {% if name == '-' %}{{locus_tag2cog_name|keyvalue:values.2}} | {% else %}{{locus_tag2cog_name|keyvalue:values.2}} | {% endif %} {%endwith%} {% with locus_tag2ko|keyvalue:values.2 as oneko %} {% if oneko == '-' %}{{locus_tag2ko|keyvalue:values.2}} | - | - | {% else %}{{locus_tag2ko|keyvalue:values.2}} | {% with ko2ko_pathways|keyvalue:oneko as name %} {% if name == '-' %}- | {% else %}{{name|safe}} | {% endif %} {%endwith%} {% with ko2ko_modules|keyvalue:oneko as name %} {% if name == '-' %}- | {% else %}{{name|safe}} | {% endif %} {%endwith%} {% endif %} {%endwith%} {% with locus2interpro|keyvalue:values.2 as interpro_data %}{% for one_interpro in interpro_data %} {% if one_interpro.0 != '-' %} {{one_interpro.0}} / {%else%} {{one_interpro.0}} {%endif%} {{one_interpro.1}} {% endfor %} {%endwith%} | {{values.7}} | {{values.8}} | {{values.9}} | {{values.10}} | {{values.11}} | {{values.12}} |