{% load static %} {% load custom_tags %} {% include "chlamdb/header.html" %}
{% include "chlamdb/menu.html" %}

Help

Create circos plots indicating the presence(red scale)/absence(light blue) of homologous proteins in one or multiple other genomes. Click on the circos plot to open a new windows with clickable version of the plot.
rRNA are colored in blue, tRNA in red.

Locus annotation

{%for data in ordered_data%} {%if data.4 == "assembly_gap"%} {% elif data.4 == "rRNA"%} {% elif data.4 == "tRNA"%} {% elif data.4 == "CDS"%} {% with locus2annot_dico|keyvalue:data.1 as values %} {% with locus_tag2cog_name|keyvalue:values.2 as name %} {% if name == '-' %} {% else %} {% endif %} {%endwith%} {% with locus_tag2ko|keyvalue:values.2 as oneko %} {% if oneko == '-' %} {% else %} {% with ko2ko_pathways|keyvalue:oneko as name %} {% if name == '-' %} {% else %} {% endif %} {%endwith%} {% with ko2ko_modules|keyvalue:oneko as name %} {% if name == '-' %} {% else %} {% endif %} {%endwith%} {% endif %} {%endwith%} {% with locus2interpro|keyvalue:values.2 as interpro_data %} {%endwith%} {%endif%} {%endfor%}
Locus start end C KO Pathways Modules Interpro Gene nH nG TM SP Product
GAP {{data.2}} {{data.3}}
{{data.1}} {{data.2}} {{data.3}} {{data.5}}
{{data.1}} {{data.2}} {{data.3}} {{data.5}}
{{values.2}} {{data.2}} {{data.3}}{{locus_tag2cog_name|keyvalue:values.2}}{{locus_tag2cog_catego|keyvalue:values.2}}{{locus_tag2ko|keyvalue:values.2}} - -{{locus_tag2ko|keyvalue:values.2}}-{{name|safe}}-{{name|safe}} {% for one_interpro in interpro_data %} {% if one_interpro.0 != '-' %} {{one_interpro.0}} / {%else%} {{one_interpro.0}} {%endif%} {{one_interpro.1}}
{% endfor %} {%endwith%}
{{values.7}} {{values.8}} {{values.9}} {{values.10}} {{values.11}} {{values.12}}
{% include "chlamdb/style_menu.html" %}