Blast a sequence of interest against the genomes of the database
Help
ffn | CDS nucleotide sequences |
fna | genome sequence(s) |
faa | protein sequences |
blastn | dna sequence vs dna sequences database |
blastp | protein sequence vs protein sequences database |
blastx | translated dna sequence vs protein sequences database |
tblastn | protein sequence vs translated nucleotide sequences database |
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Help to interpret the results
The blast search generates two output pages according to the search parameters set up in the analysis:
Details: this page showa the graphical overview of blast hits identified on the genome(s) of interest colored according to the max score or E-value. Each hit is listed in the following table. It reportes the alignment scores and the contigs or locus tags of the match (Note that the locus tag is clickable and redirects you to a comphensive locus tag overview).
{% if phylo_distrib %}
Phylogenetic distribution: Heatmap of the amino-acid/nucleotide identity of the best hit for each taxa.
{% endif %}
{% endif %}
Result
No hits
{% elif blast_err %}Error
{% autoescape off %}{{blast_err}}{% endautoescape %}{% endif %}