Acid Genomics Base Functions

[Up] [Top]

Documentation for package ‘AcidBase’ version 0.2.6

Help Pages

appendToBody Append values to function body
bapply Boolean apply
barcodePattern Single-sell barcode pattern
basenameSansExt Base name without the file extension
callAndName Call a function and give the result names
compress Compress or decompress a file
compressExtPattern File extension pattern matching
decompress Compress or decompress a file
dots Extract dots from function
download Download a file from the Internet
extPattern File extension pattern matching
fileDepth File depth
fileExt File extension
forceDetach Force detach packages
formalsList Shared list of optional default formals
genomeMetadataNames Slot names in metadata containing genome information
getNameInParent Get the name of a variable defined in the parent frame
headtail Return the first and last parts of an object
headtail-method Return the first and last parts of an object
initDir Initialize directory
lanePattern Sequencing lane grep pattern
majorVersion Major version
matchArgsToDoCall Match arguments to 'do.call'
metadataBlacklist Sample metadata blacklist
methodDefinition Access the data inside an S4 method definition
methodFormals Access the data inside an S4 method definition
methodFunction Access the data inside an S4 method definition
metricsCols Quality control metric columns
minorVersion Minor version
params Shared parameter documentation
pasteURL Concatenate strings to form a URL
printString Print string
realpath Express file paths in canonical form
requireNamespaces Require package namespaces
safeDeparse Expression deparsing
sanitizeVersion Sanitize version
sem Standard error of the mean
sem-method Standard error of the mean
shell Invoke a command in the system command-line shell
shorten Shorten (truncate) input to a specified width
showSlotInfo Show slot information
standardizeCall Standardize call
toNames Sanitize vector input to names
updateMessage Update message