{% extends "layout.html" %} {% block head %} {% if C2PRO_INSTALLED %} {% endif %} {% endblock %} {% block content %}
{% if report_data['report_display_name'] != '' %}
{{report_data['report_display_name']}}
{% endif %} {{ render_partial('shared/partials/guardrail_warnings.html', report_data=report_data) }}
CRISPResso2 run information
{{ render_partial('shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_1a')}}
{{ render_partial('shared/partials/log_params.html', report_data=report_data) }}
Allele assignments
{{ render_partial('shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_1b')}}
{{ render_partial('shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_1c')}}
{% if 'plot_1d' in report_data['figures']['locs'] %}
{{ render_partial('shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_1d')}}
{% endif %}
{# end card #} {# start global coding sequence report #} {% if 'plot_5a' in report_data['figures']['locs'] %}
Global frameshift analysis
{{ render_partial('shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_5a')}}
{% endif %} {% if 'plot_6a' in report_data['figures']['locs'] %}
Global frameshift mutagenesis profiles
{{ render_partial('shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_6a')}}
{% endif %} {% if 'plot_8a' in report_data['figures']['locs'] %}
Global splicing analysis
{{ render_partial('shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_8a')}}
{% endif %} {# end of global coding sequence analysis #} {# start hdr summary #} {% if 'plot_4g' in report_data['figures']['locs'][report_data.amplicons[0]] or 'plot_4g' in report_data['figures']['htmls'][report_data.amplicons[0]] %}
{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
HDR summary plot
{% else %}
HDR summary report (all reads aligned to {{report_data.amplicons[0]}})
{% endif %}
{{ render_partial('shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_4g', amplicon_name=report_data.amplicons[0])}}
{% endif %} {# end HDR summary #} {# start prime editing report #} {% if 'plot_11a' in report_data['figures']['locs'][report_data.amplicons[0]] %}
{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
Prime editing report
{% else %}
Prime editing report (all reads aligned to {{report_data.amplicons[0]}})
{% endif %}
{{ render_partial('shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_11a', amplicon_name=report_data.amplicons[0])}}
{% endif %} {% if report_data.amplicons[0] in report_data['figures']['sgRNA_based_names'] and '11b' in report_data['figures']['sgRNA_based_names'][report_data.amplicons[0]] and report_data['figures']['sgRNA_based_names'][report_data.amplicons[0]]['11b']|length > 0 %}
{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
Prime editing summary plots at analysis positions
{% else %}
Prime editing summary plots at analysis positions (aligned to {{report_data.amplicons[0]}})
{% endif %}
{% for fig_name in report_data['figures']['sgRNA_based_names'][report_data.amplicons[0]]['11b'] %}
{{ render_partial('shared/partials/fig_reports.html', report_data=report_data, fig_name=fig_name, amplicon_name=report_data.amplicons[0])}}
{% endfor %}
{% endif %} {# end plot 11b for prime editing #} {% if 'plot_11c' in report_data['figures']['locs'] %}
Scaffold insertions
{{ render_partial('shared/partials/fig_reports.html', report_data=report_data, fig_name='plot_11c')}}
{% endif %} {# end prime editing section #} {% if report_data.amplicons|length == 1 %}
{# if only one amplicon, just a normal div #} {% else %} {# If there is more than one amplicon, print a navigation to show each amplicon #}

Reads are aligned to each amplicon sequence separately. Quantification and visualization of these reads are shown for each amplicon below:

Amplicons
{% endif %} {# end if report contains more than one amplicon #} {% if report_data.amplicons|length == 1 %} {# if only one amplicon, just a normal div #}
{% else %} {# jumbotron_content #}
{# jumbrotron #}
{# column #}
{% endblock %} {% block foot %} {% if C2PRO_INSTALLED %} {{ render_partial('partials/batch_d3.html', nucleotide_quilt_slugs=(report_data['nuc_quilt_names'])) }} {% endif %} {% endblock %}