# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Oct 31 12:05:46 2018
# ------------------------------------------------

package:
    name: seq-seq-pan
    version: 1.0.1
source:
    md5: 3d2b2c835d9a7f8412551e9462202c60
    url: https://gitlab.com/chrjan/seq-seq-pan/repository/v1.0.1/archive.tar.gz
build:
    number: '0'
    string: py35_0
requirements:
    host:
        - bzip2 1.0.6 h470a237_2
        - ca-certificates 2018.10.15 ha4d7672_0
        - certifi 2018.8.24 py35_1001
        - libffi 3.2.1 hfc679d8_5
        - libgcc-ng 7.2.0 hdf63c60_3
        - libstdcxx-ng 7.2.0 hdf63c60_3
        - ncurses 6.1 hfc679d8_1
        - openssl 1.0.2p h470a237_1
        - pip 18.0 py35_1001
        - python 3.5.5 h5001a0f_2
        - readline 7.0 haf1bffa_1
        - setuptools 40.4.3 py35_0
        - sqlite 3.25.2 hb1c47c0_0
        - tk 8.6.8 ha92aebf_0
        - wheel 0.32.0 py35_1000
        - xz 5.2.4 h470a237_1
        - zlib 1.2.11 h470a237_3
    run:
        - argparse
        - biopython ==1.69
        - blat ==35
        - mauvealigner ==1.2.0
        - openjdk
        - python >=3.5,<3.6.0a0
        - snakemake
test:
    commands:
        - seq-seq-pan -h > /dev/null
        - seq-seq-pan-wga --no-hooks --config workdir=$PREFIX/opt/seq-seq-pan/example/minimal
            genomefile=genome_list.txt outfilename=ssp_example -n > /dev/null
        - java -jar $PREFIX/opt/seq-seq-pan/java/XMFAConsensus/XMFAconsensus_majorityvote.jar
            -h > /dev/null
        - seq-seq-pan-consensus -h > /dev/null
        - seq-seq-pan-genomedescription -h >/dev/null
about:
    home: https://gitlab.com/chrjan/seq-seq-pan
    license: FreeBSD
    summary: seq-seq-pan is a workflow for the SEQuential alignment of SEQuences to
        build a PAN-genome data structure and a whole-genome-alignment.
extra:
    copy_test_source_files: true
    final: true
