## Hierarchy For Package edu.msu.cme.rdp.classifier.rrnaclassifier

Package Hierarchies:
  All Packages

## Class Hierarchy

- java.lang.Object
  - junit.framework.Assert
    - junit.framework.TestCase (implements junit.framework.Test)
      - edu.msu.cme.rdp.classifier.rrnaclassifier.ClassifierTest
      - edu.msu.cme.rdp.classifier.rrnaclassifier.HierarchyTreeTest
      - edu.msu.cme.rdp.classifier.rrnaclassifier.TrainingInfoTest
      - edu.msu.cme.rdp.classifier.rrnaclassifier.TreeFileParserTest
  - edu.msu.cme.rdp.classifier.rrnaclassifier.ClassificationResult
  - edu.msu.cme.rdp.classifier.rrnaclassifier.ClassificationResultFormatter
  - edu.msu.cme.rdp.classifier.rrnaclassifier.Classifier
  - edu.msu.cme.rdp.classifier.rrnaclassifier.ClassifierCmd
  - edu.msu.cme.rdp.classifier.rrnaclassifier.ClassifierFactory
  - org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
    - edu.msu.cme.rdp.classifier.rrnaclassifier.TreeFileParser
  - edu.msu.cme.rdp.classifier.rrnaclassifier.GenusWordConditionalProb
  - edu.msu.cme.rdp.classifier.rrnaclassifier.GenusWordProbFileParser
  - edu.msu.cme.rdp.classifier.rrnaclassifier.HierarchyTree
  - edu.msu.cme.rdp.classifier.rrnaclassifier.HierarchyVersion
  - edu.msu.cme.rdp.classifier.rrnaclassifier.LogWordPriorFileParser
  - edu.msu.cme.rdp.classifier.rrnaclassifier.ProbIndexFileParser
  - edu.msu.cme.rdp.classifier.rrnaclassifier.RankAssignment
  - java.lang.Throwable (implements java.io.Serializable)
    - java.lang.Exception
      - java.lang.RuntimeException
        - java.lang.IllegalArgumentException
          - edu.msu.cme.rdp.classifier.rrnaclassifier.ShortSequenceException
      - edu.msu.cme.rdp.classifier.rrnaclassifier.TrainingDataException
  - edu.msu.cme.rdp.classifier.rrnaclassifier.TrainingInfo

## Enum Hierarchy

- java.lang.Object
  - java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    - edu.msu.cme.rdp.classifier.rrnaclassifier.ClassificationResultFormatter.FORMAT