GMD-package |
The Package for Generalized Minimum Distance (GMD) Computation |
as.ghist |
Generalized Histogram Computation |
as.mhist |
Generalized Histogram Computation |
bedgraph.to.depth |
Convert a BedGraph fiel to a vector of depth-like signals |
cage |
CAGE Data: Transcription Start Site Distributions (TSSDs) by CAGE tags |
cagel |
CAGE Data: Transcription Start Site Distributions (TSSDs) by CAGE tags |
chipseq |
ChIP-seq data: ChIP-seq Enrichment around TSSs |
chipseq_hCD4T |
ChIP-seq data: ChIP-seq Enrichment around TSSs |
chipseq_mES |
ChIP-seq data: ChIP-seq Enrichment around TSSs |
css |
Clustering Sum-of-Squares for clustering evaluation |
css.hclust |
Clustering Sum-of-Squares for clustering evaluation |
elbow |
The "Elbow" Method for Clustering Evaluation |
elbow.batch |
The "Elbow" Method for Clustering Evaluation |
equalize.list |
Make members of a list equal size |
gbreaks |
Generalized Histogram Computation |
gdist |
Generalized Distance Matrix Computation |
get.sep |
Get row or column lines of separation for heatmap.3 |
ghist |
Generalized Histogram Computation |
GMD |
The Package for Generalized Minimum Distance (GMD) Computation |
gmdm |
Generalized Minimum Distance Matrix |
gmdm2dist |
Generalized Minimum Distance Matrix |
gmdm_dist |
Generalized Minimum Distance Matrix |
gmdp |
Generalized Minimum Distance between a pair of distributions |
heatmap.3 |
Enhanced Heatmap Representation with Dendrogram and Partition |
is.dist |
Generalized Distance Matrix Computation |
is.ghist |
Generalized Histogram Computation |
is.mhist |
Generalized Histogram Computation |
legend |
Add Legends to Plots |
mhist |
Generalized Histogram Computation |
mhist.summary |
Bin-wise summary of histograms |
mhist2matrix |
Generalized Histogram Computation |
plot.elbow |
The "Elbow" Method for Clustering Evaluation |
plot.gmdm |
S3 method for class 'gmdm' |
plot.gmdp |
Plot function for class gmdp |
plot.mhist |
S3 method for class 'mhist'. |
plot.mhist.summary |
Bin-wise summary of histograms |
print.gmdm |
Generalized Minimum Distance Matrix |
print.gmdp |
Generalized Minimum Distance between a pair of distributions |
summary.gmdp |
Generalized Minimum Distance between a pair of distributions |
ts2df |
Convert time series to data frame |