Database and Motifs | High-scoring Motif Occurences | Debugging Information | Results in TSV Format | Results in GFF3 Format |
FIMO version 5.5.1, (Release date: Sun Jan 29 10:33:12 2023 -0800)
For further information on how to interpret these results please access https://meme-suite.org/meme/doc/fimo-output-format.html.
To get a copy of the FIMO software please access https://meme-suite.org
If you use FIMO in your research, please cite the following paper:
Charles E. Grant, Timothy L. Bailey, and William Stafford Noble,
"FIMO: Scanning for occurrences of a given motif",
Bioinformatics, 27(7):1017-1018, 2011.
[full text]
DATABASE nrmix.nseqs.100.100bp.seed.1.fa
Database contains 2100 sequences, 210000 residues
MOTIFS xstreme_example_output_files/streme_out/streme.xml (DNA)
MOTIF | WIDTH | BEST POSSIBLE MATCH |
---|---|---|
1-CCASYAGRGGGCGCY | 15 | CCACCAGGGGGCGCC |
2-GCTGAGTCATN | 11 | GCTGAGTCATG |
3-GCGCATGCGCAC | 12 | GCGCATGCGCAC |
4-AGATAAGG | 8 | AGATAAGG |
5-CACTTCCTGKT | 11 | CACTTCCTGTT |
6-CCCCGCCCCCD | 11 | CCCCGCCCCCT |
7-CAAGATGGC | 9 | CAAGATGGC |
8-GGTCACGTGAYGS | 13 | GGTCACGTGACGC |
Random model letter frequencies (xstreme_example_output_files/background):
A 0.222 C 0.278 G 0.278 T 0.222
Motif ID | Alt ID | Sequence Name | Strand | Start | End | p-value | q-value | Matched Sequence |
---|---|---|---|---|---|---|---|---|
8-GGTCACGTGAYGS | STREME-8 | X | + | 1510426 | 1510438 | 2.41e-08 | 0.00892 | GGTCACGTGACGC |
8-GGTCACGTGAYGS | STREME-8 | 17 | - | 32001696 | 32001708 | 1.26e-07 | 0.0185 | GGTCACGTGATTC |
8-GGTCACGTGAYGS | STREME-8 | 10 | + | 69644166 | 69644178 | 1.7e-07 | 0.0185 | GGTCACGTGATGG |
8-GGTCACGTGAYGS | STREME-8 | 20 | - | 18118499 | 18118511 | 2.85e-07 | 0.0185 | GGTCACGTGACAC |
8-GGTCACGTGAYGS | STREME-8 | 1 | - | 202896250 | 202896262 | 2.85e-07 | 0.0185 | GGTCACGTGACAC |
8-GGTCACGTGAYGS | STREME-8 | 13 | + | 49684177 | 49684189 | 3e-07 | 0.0185 | GGTCACGTGATGA |
8-GGTCACGTGAYGS | STREME-8 | 17 | - | 7137716 | 7137728 | 3.83e-07 | 0.0202 | GGTCACGTGATTG |
8-GGTCACGTGAYGS | STREME-8 | 12 | + | 108439930 | 108439942 | 4.47e-07 | 0.0206 | GGTCACGTGATGT |
8-GGTCACGTGAYGS | STREME-8 | 13 | + | 49684191 | 49684203 | 7.54e-07 | 0.031 | TGTCACGTGACTC |
8-GGTCACGTGAYGS | STREME-8 | 13 | + | 113951322 | 113951334 | 8.87e-07 | 0.0328 | GATCACGTGACGC |
8-GGTCACGTGAYGS | STREME-8 | 14 | - | 20923136 | 20923148 | 1.15e-06 | 0.0359 | GGTCACGTGATCA |
8-GGTCACGTGAYGS | STREME-8 | 10 | - | 120514553 | 120514565 | 1.17e-06 | 0.0359 | TGTCACGTGAGGC |
8-GGTCACGTGAYGS | STREME-8 | 17 | + | 72510834 | 72510846 | 1.54e-06 | 0.0437 | TGTCACGTGATGG |
8-GGTCACGTGAYGS | STREME-8 | 17 | - | 7137697 | 7137709 | 1.88e-06 | 0.0445 | GATCACGTGACGG |
8-GGTCACGTGAYGS | STREME-8 | 5 | + | 1799798 | 1799810 | 1.99e-06 | 0.0445 | GGTCACGTGGCGT |
8-GGTCACGTGAYGS | STREME-8 | X | + | 149736758 | 149736770 | 2.11e-06 | 0.0445 | CGTCACGTGATGC |
8-GGTCACGTGAYGS | STREME-8 | 12 | - | 13080215 | 13080227 | 2.19e-06 | 0.0445 | GCTCACGTGAGGC |
8-GGTCACGTGAYGS | STREME-8 | 11 | + | 64268100 | 64268112 | 2.21e-06 | 0.0445 | GGTCACGTGAGCA |
8-GGTCACGTGAYGS | STREME-8 | 12 | - | 125635867 | 125635879 | 2.38e-06 | 0.0445 | GGTCACGTGTCTC |
8-GGTCACGTGAYGS | STREME-8 | 1 | - | 33116367 | 33116379 | 2.41e-06 | 0.0445 | GGTCACGTGAGAG |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 47184650 | 47184662 | 2.73e-06 | 0.0451 | GGTGACGTCACGC |
8-GGTCACGTGAYGS | STREME-8 | 5 | + | 133561583 | 133561595 | 2.73e-06 | 0.0451 | GGTGACGTCACGC |
8-GGTCACGTGAYGS | STREME-8 | 20 | + | 18118500 | 18118512 | 3e-06 | 0.0451 | TGTCACGTGACCG |
8-GGTCACGTGAYGS | STREME-8 | 6 | + | 36953774 | 36953786 | 3.11e-06 | 0.0451 | CGTCACGTGACGG |
8-GGTCACGTGAYGS | STREME-8 | 6 | - | 36953773 | 36953785 | 3.11e-06 | 0.0451 | CGTCACGTGACGG |
8-GGTCACGTGAYGS | STREME-8 | 5 | + | 172410543 | 172410555 | 3.18e-06 | 0.0451 | GGTCACGTGGGGG |
8-GGTCACGTGAYGS | STREME-8 | 7 | - | 139285068 | 139285080 | 3.3e-06 | 0.0451 | GGTCATGTGACCC |
8-GGTCACGTGAYGS | STREME-8 | 3 | - | 156272909 | 156272921 | 3.73e-06 | 0.0476 | GGTCACGTGGCTT |
8-GGTCACGTGAYGS | STREME-8 | 10 | + | 105091931 | 105091943 | 3.83e-06 | 0.0476 | GCTCACGTGATCC |
8-GGTCACGTGAYGS | STREME-8 | 5 | + | 64383012 | 64383024 | 3.86e-06 | 0.0476 | TGTCACGTGAGCC |
8-GGTCACGTGAYGS | STREME-8 | 12 | + | 64616163 | 64616175 | 4.15e-06 | 0.0495 | GGTGACGTCATGC |
8-GGTCACGTGAYGS | STREME-8 | 5 | - | 43603047 | 43603059 | 4.75e-06 | 0.0546 | GGCCACGTGACTG |
8-GGTCACGTGAYGS | STREME-8 | 6 | + | 26026409 | 26026421 | 5.02e-06 | 0.0546 | GGTGACGTCACTC |
8-GGTCACGTGAYGS | STREME-8 | 4 | - | 124468337 | 124468349 | 5.02e-06 | 0.0546 | GGTCACGTGGTCG |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 202896251 | 202896263 | 5.55e-06 | 0.0552 | TGTCACGTGACCT |
8-GGTCACGTGAYGS | STREME-8 | 9 | - | 19127349 | 19127361 | 5.74e-06 | 0.0552 | GGTCACGTGCTGC |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 155210858 | 155210870 | 5.87e-06 | 0.0552 | GGTCATGTGATGA |
8-GGTCACGTGAYGS | STREME-8 | 1 | - | 155210877 | 155210889 | 6.17e-06 | 0.0552 | TGTCATGTGACGC |
8-GGTCACGTGAYGS | STREME-8 | 22 | - | 19934825 | 19934837 | 6.24e-06 | 0.0552 | GGACACGTGACCC |
8-GGTCACGTGAYGS | STREME-8 | 20 | + | 48118405 | 48118417 | 6.27e-06 | 0.0552 | GGTCATGTGATTG |
8-GGTCACGTGAYGS | STREME-8 | 21 | - | 38738691 | 38738703 | 6.29e-06 | 0.0552 | GGTCACGTGAAGG |
8-GGTCACGTGAYGS | STREME-8 | 17 | - | 79438986 | 79438998 | 6.35e-06 | 0.0552 | GGTCATGTGACCG |
8-GGTCACGTGAYGS | STREME-8 | 17 | + | 7137698 | 7137710 | 6.57e-06 | 0.0552 | CGTCACGTGATCC |
8-GGTCACGTGAYGS | STREME-8 | 13 | - | 113951321 | 113951333 | 6.57e-06 | 0.0552 | CGTCACGTGATCC |
8-GGTCACGTGAYGS | STREME-8 | 10 | - | 105091930 | 105091942 | 7.32e-06 | 0.0602 | GATCACGTGAGCC |
8-GGTCACGTGAYGS | STREME-8 | 11 | - | 64268099 | 64268111 | 8.21e-06 | 0.0638 | GCTCACGTGACCA |
8-GGTCACGTGAYGS | STREME-8 | 13 | - | 50699697 | 50699709 | 8.31e-06 | 0.0638 | GGGCACGTGACGG |
8-GGTCACGTGAYGS | STREME-8 | X | - | 1510425 | 1510437 | 8.6e-06 | 0.0638 | CGTCACGTGACCG |
8-GGTCACGTGAYGS | STREME-8 | 11 | + | 1784995 | 1785007 | 8.67e-06 | 0.0638 | GGTCACGTGGGCG |
8-GGTCACGTGAYGS | STREME-8 | 16 | - | 24894927 | 24894939 | 8.87e-06 | 0.0638 | GGCCACGTGACTT |
8-GGTCACGTGAYGS | STREME-8 | 12 | + | 53886610 | 53886622 | 9.01e-06 | 0.0638 | CGTCACGTGGCGC |
8-GGTCACGTGAYGS | STREME-8 | 14 | + | 20923137 | 20923149 | 9.24e-06 | 0.0638 | GATCACGTGACCA |
8-GGTCACGTGAYGS | STREME-8 | 11 | - | 65479233 | 65479245 | 9.31e-06 | 0.0638 | GGTCACGTGGCAA |
8-GGTCACGTGAYGS | STREME-8 | 10 | + | 104179341 | 104179353 | 9.35e-06 | 0.0638 | GCTCACGTGGCTC |
8-GGTCACGTGAYGS | STREME-8 | 12 | + | 104358558 | 104358570 | 9.5e-06 | 0.0638 | GATCACGTGAGTG |
8-GGTCACGTGAYGS | STREME-8 | 6 | - | 14211175 | 14211187 | 9.95e-06 | 0.0657 | GGTCACGTGGGTT |
8-GGTCACGTGAYGS | STREME-8 | 11 | + | 6640452 | 6640464 | 1.14e-05 | 0.0718 | TGTCATGTGACGG |
8-GGTCACGTGAYGS | STREME-8 | 6 | - | 26285682 | 26285694 | 1.15e-05 | 0.0718 | GGTGACGTCATCC |
8-GGTCACGTGAYGS | STREME-8 | 6 | - | 26285682 | 26285694 | 1.15e-05 | 0.0718 | GGTGACGTCATCC |
8-GGTCACGTGAYGS | STREME-8 | 6 | + | 17820163 | 17820175 | 1.2e-05 | 0.0734 | GGCCACGTGAGTG |
8-GGTCACGTGAYGS | STREME-8 | 22 | + | 19934826 | 19934838 | 1.21e-05 | 0.0734 | GGTCACGTGTCCA |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 33116368 | 33116380 | 1.25e-05 | 0.0734 | TCTCACGTGACCC |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 202896233 | 202896245 | 1.25e-05 | 0.0734 | CGTCACGTGAGGA |
8-GGTCACGTGAYGS | STREME-8 | 1 | - | 202896232 | 202896244 | 1.31e-05 | 0.0751 | CCTCACGTGACGC |
8-GGTCACGTGAYGS | STREME-8 | 16 | - | 84047334 | 84047346 | 1.33e-05 | 0.0751 | GGCCACGTGGCTC |
8-GGTCACGTGAYGS | STREME-8 | 5 | + | 139030726 | 139030738 | 1.35e-05 | 0.0751 | TATCACGTGAGGC |
8-GGTCACGTGAYGS | STREME-8 | 5 | - | 64383011 | 64383023 | 1.36e-05 | 0.0751 | GCTCACGTGACAA |
8-GGTCACGTGAYGS | STREME-8 | 3 | - | 156877811 | 156877823 | 1.41e-05 | 0.0768 | GGTGACGTCAGGG |
8-GGTCACGTGAYGS | STREME-8 | X | - | 155227107 | 155227119 | 1.43e-05 | 0.0768 | GGTGACGTGAGCT |
8-GGTCACGTGAYGS | STREME-8 | 5 | - | 55544832 | 55544844 | 1.53e-05 | 0.0806 | GGTCACCTGATCC |
8-GGTCACGTGAYGS | STREME-8 | 12 | - | 121454133 | 121454145 | 1.61e-05 | 0.0839 | TCTCACGTGACGT |
8-GGTCACGTGAYGS | STREME-8 | 12 | + | 6532638 | 6532650 | 1.64e-05 | 0.0841 | GGCCACGTGAGAC |
8-GGTCACGTGAYGS | STREME-8 | 17 | + | 72510900 | 72510912 | 1.69e-05 | 0.0848 | TGTCATGTGATGG |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 41399549 | 41399561 | 1.7e-05 | 0.0848 | GGAGACGTGATGC |
8-GGTCACGTGAYGS | STREME-8 | 11 | + | 65479234 | 65479246 | 1.79e-05 | 0.0883 | TGCCACGTGACCC |
8-GGTCACGTGAYGS | STREME-8 | 16 | - | 82186169 | 82186181 | 1.82e-05 | 0.0883 | GGTCATGTGGTGG |
8-GGTCACGTGAYGS | STREME-8 | 17 | - | 74733851 | 74733863 | 1.86e-05 | 0.0891 | GGTCACCTGACCG |
8-GGTCACGTGAYGS | STREME-8 | 4 | - | 170541261 | 170541273 | 1.93e-05 | 0.0915 | GCTCACGTCAGTC |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 226111805 | 226111817 | 1.97e-05 | 0.0917 | GGCCACGTGGCCC |
8-GGTCACGTGAYGS | STREME-8 | 21 | + | 44313019 | 44313031 | 1.98e-05 | 0.0917 | GGTGACGTGTCCC |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 199901152 | 199901164 | 2.05e-05 | 0.0934 | TGCCACGTGACGA |
8-GGTCACGTGAYGS | STREME-8 | 4 | - | 24474441 | 24474453 | 2.14e-05 | 0.0964 | GCCCACGTGACGG |
8-GGTCACGTGAYGS | STREME-8 | 1 | - | 172686861 | 172686873 | 2.24e-05 | 0.0998 | GATCACGTGTCTC |
8-GGTCACGTGAYGS | STREME-8 | 18 | - | 60189969 | 60189981 | 2.49e-05 | 0.109 | GGTGACGTCGCTC |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 243264885 | 243264897 | 2.53e-05 | 0.109 | TGTGACGTCACGG |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 243264910 | 243264922 | 2.53e-05 | 0.109 | TGTGACGTCACGG |
8-GGTCACGTGAYGS | STREME-8 | X | - | 149736757 | 149736769 | 2.6e-05 | 0.111 | CATCACGTGACGG |
8-GGTCACGTGAYGS | STREME-8 | 22 | + | 44381422 | 44381434 | 2.86e-05 | 0.12 | GGTCACGTGTTAA |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 161346827 | 161346839 | 2.94e-05 | 0.122 | GGTCACCTGAGGT |
8-GGTCACGTGAYGS | STREME-8 | 10 | - | 80962271 | 80962283 | 3.02e-05 | 0.124 | GGGCACGTCACTC |
8-GGTCACGTGAYGS | STREME-8 | 14 | - | 105533650 | 105533662 | 3.12e-05 | 0.124 | TGGCACGTGACTC |
8-GGTCACGTGAYGS | STREME-8 | 3 | + | 128215758 | 128215770 | 3.12e-05 | 0.124 | GGACACGTGGTGG |
8-GGTCACGTGAYGS | STREME-8 | 17 | + | 49199091 | 49199103 | 3.21e-05 | 0.124 | TGTCACGTGTGGG |
8-GGTCACGTGAYGS | STREME-8 | 12 | + | 121454134 | 121454146 | 3.21e-05 | 0.124 | CGTCACGTGAGAG |
8-GGTCACGTGAYGS | STREME-8 | 12 | + | 125635822 | 125635834 | 3.24e-05 | 0.124 | GATCATGTGACTG |
8-GGTCACGTGAYGS | STREME-8 | 12 | - | 53886609 | 53886621 | 3.29e-05 | 0.124 | CGCCACGTGACGG |
8-GGTCACGTGAYGS | STREME-8 | X | + | 155227108 | 155227120 | 3.29e-05 | 0.124 | GCTCACGTCACCA |
8-GGTCACGTGAYGS | STREME-8 | 19 | - | 50180633 | 50180645 | 3.31e-05 | 0.124 | GGCCACGTGGGGG |
8-GGTCACGTGAYGS | STREME-8 | 7 | - | 150759348 | 150759360 | 3.31e-05 | 0.124 | GGCCACGTGGGGG |
8-GGTCACGTGAYGS | STREME-8 | 12 | - | 46777089 | 46777101 | 3.36e-05 | 0.124 | CGTCACGTGGGTC |
8-GGTCACGTGAYGS | STREME-8 | 10 | - | 69644165 | 69644177 | 3.44e-05 | 0.124 | CATCACGTGACCC |
8-GGTCACGTGAYGS | STREME-8 | 10 | + | 80471938 | 80471950 | 3.48e-05 | 0.124 | GGACATGTGACTC |
8-GGTCACGTGAYGS | STREME-8 | 12 | - | 133022595 | 133022607 | 3.48e-05 | 0.124 | GGTGACGTCATCT |
8-GGTCACGTGAYGS | STREME-8 | 1 | - | 168147765 | 168147777 | 3.48e-05 | 0.124 | GGTGACGTCATCT |
8-GGTCACGTGAYGS | STREME-8 | 17 | + | 72510868 | 72510880 | 3.68e-05 | 0.128 | CATCACGTGATGG |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 3816680 | 3816692 | 3.7e-05 | 0.128 | CGTCATGTGATTC |
8-GGTCACGTGAYGS | STREME-8 | 13 | - | 49684190 | 49684202 | 3.72e-05 | 0.128 | AGTCACGTGACAG |
8-GGTCACGTGAYGS | STREME-8 | 13 | - | 52123159 | 52123171 | 3.83e-05 | 0.131 | GGTCACCTCAGGC |
8-GGTCACGTGAYGS | STREME-8 | 11 | - | 118479252 | 118479264 | 4.02e-05 | 0.136 | GGTGGCGTGACGC |
8-GGTCACGTGAYGS | STREME-8 | 16 | - | 75656986 | 75656998 | 4.04e-05 | 0.136 | TGTGACGTCACGT |
8-GGTCACGTGAYGS | STREME-8 | 19 | - | 50836348 | 50836360 | 4.19e-05 | 0.139 | GGTGATGTCACTC |
8-GGTCACGTGAYGS | STREME-8 | 5 | - | 1799797 | 1799809 | 4.27e-05 | 0.141 | CGCCACGTGACCC |
8-GGTCACGTGAYGS | STREME-8 | 21 | - | 44313018 | 44313030 | 4.46e-05 | 0.146 | GGACACGTCACCG |
8-GGTCACGTGAYGS | STREME-8 | 8 | - | 95961526 | 95961538 | 4.52e-05 | 0.147 | GGTCACGTGCGTT |
8-GGTCACGTGAYGS | STREME-8 | 5 | - | 10607859 | 10607871 | 4.78e-05 | 0.149 | GGTCACGAGAGGA |
8-GGTCACGTGAYGS | STREME-8 | 11 | - | 1784994 | 1785006 | 4.82e-05 | 0.149 | GCCCACGTGACCG |
8-GGTCACGTGAYGS | STREME-8 | 22 | - | 36519918 | 36519930 | 4.82e-05 | 0.149 | GGTGACGTCAGCA |
8-GGTCACGTGAYGS | STREME-8 | 9 | - | 92219579 | 92219591 | 4.82e-05 | 0.149 | GGCCACGTGGGGA |
8-GGTCACGTGAYGS | STREME-8 | 3 | + | 5228825 | 5228837 | 4.85e-05 | 0.149 | GGTCACGTCTGTG |
8-GGTCACGTGAYGS | STREME-8 | 12 | + | 121668067 | 121668079 | 4.85e-05 | 0.149 | GGTGACGTGTGGA |
8-GGTCACGTGAYGS | STREME-8 | 19 | + | 50979328 | 50979340 | 5.13e-05 | 0.157 | TGTGACGTCATGA |
8-GGTCACGTGAYGS | STREME-8 | 12 | - | 6532637 | 6532649 | 5.33e-05 | 0.16 | TCTCACGTGGCCC |
8-GGTCACGTGAYGS | STREME-8 | 12 | - | 133022544 | 133022556 | 5.33e-05 | 0.16 | GGTGACGTCATAT |
8-GGTCACGTGAYGS | STREME-8 | 10 | + | 70088013 | 70088025 | 5.4e-05 | 0.161 | GATCACGTGTTTG |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 168147766 | 168147778 | 5.44e-05 | 0.161 | GATGACGTCACCC |
8-GGTCACGTGAYGS | STREME-8 | 19 | - | 49375416 | 49375428 | 5.56e-05 | 0.162 | GCTGACGTCACGA |
8-GGTCACGTGAYGS | STREME-8 | 10 | + | 97515203 | 97515215 | 5.56e-05 | 0.162 | GGTCACCTGTTGC |
8-GGTCACGTGAYGS | STREME-8 | 19 | + | 49311140 | 49311152 | 5.7e-05 | 0.162 | GGTCACTTGTCGC |
8-GGTCACGTGAYGS | STREME-8 | 2 | + | 240964597 | 240964609 | 5.73e-05 | 0.162 | CGTGACGTCACGG |
8-GGTCACGTGAYGS | STREME-8 | 2 | - | 240964596 | 240964608 | 5.73e-05 | 0.162 | CGTGACGTCACGG |
8-GGTCACGTGAYGS | STREME-8 | 17 | - | 72510867 | 72510879 | 5.8e-05 | 0.162 | CATCACGTGATGT |
8-GGTCACGTGAYGS | STREME-8 | 1 | - | 199901151 | 199901163 | 5.8e-05 | 0.162 | CGTCACGTGGCAG |
8-GGTCACGTGAYGS | STREME-8 | 2 | - | 209451222 | 209451234 | 5.88e-05 | 0.163 | GGCCATGTGACTA |
8-GGTCACGTGAYGS | STREME-8 | 2 | - | 55367669 | 55367681 | 6.03e-05 | 0.164 | GGTCATGTGTTGT |
8-GGTCACGTGAYGS | STREME-8 | 6 | + | 106773484 | 106773496 | 6.03e-05 | 0.164 | GATGACGTCACGA |
8-GGTCACGTGAYGS | STREME-8 | 12 | - | 64616178 | 64616190 | 6.05e-05 | 0.164 | GCTGACGTCACGT |
8-GGTCACGTGAYGS | STREME-8 | 7 | + | 5492622 | 5492634 | 6.38e-05 | 0.171 | GATGACGTCACTG |
8-GGTCACGTGAYGS | STREME-8 | 12 | + | 108439879 | 108439891 | 6.38e-05 | 0.171 | AGTCATGTGACTC |
8-GGTCACGTGAYGS | STREME-8 | 19 | + | 1568263 | 1568275 | 6.53e-05 | 0.174 | GGGCACGTGGTCC |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 161509764 | 161509776 | 7.03e-05 | 0.185 | GGAGACGTGAGTG |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 9488813 | 9488825 | 7.07e-05 | 0.185 | GCTTACGTCACGC |
8-GGTCACGTGAYGS | STREME-8 | 17 | + | 72510829 | 72510841 | 7.17e-05 | 0.187 | GGTGATGTCACGT |
8-GGTCACGTGAYGS | STREME-8 | 1 | - | 47184649 | 47184661 | 7.36e-05 | 0.19 | CGTGACGTCACCC |
8-GGTCACGTGAYGS | STREME-8 | 1 | - | 1790050 | 1790062 | 7.63e-05 | 0.196 | TGTGACGTCATCG |
8-GGTCACGTGAYGS | STREME-8 | 16 | - | 28228585 | 28228597 | 7.82e-05 | 0.198 | GGGCATGTGACCC |
8-GGTCACGTGAYGS | STREME-8 | 4 | + | 24474442 | 24474454 | 7.86e-05 | 0.198 | CGTCACGTGGGCG |
8-GGTCACGTGAYGS | STREME-8 | 17 | - | 73029784 | 73029796 | 7.92e-05 | 0.198 | GGGCACGTGGCCG |
8-GGTCACGTGAYGS | STREME-8 | 6 | + | 29720865 | 29720877 | 8.05e-05 | 0.198 | GGTGACGTGTGTT |
8-GGTCACGTGAYGS | STREME-8 | 17 | + | 73029785 | 73029797 | 8.05e-05 | 0.198 | GGCCACGTGCCCC |
8-GGTCACGTGAYGS | STREME-8 | 1 | - | 9488839 | 9488851 | 8.09e-05 | 0.198 | GATGACGTCACAC |
8-GGTCACGTGAYGS | STREME-8 | 4 | + | 124468338 | 124468350 | 8.15e-05 | 0.198 | GACCACGTGACCT |
8-GGTCACGTGAYGS | STREME-8 | 2 | - | 136057217 | 136057229 | 8.15e-05 | 0.198 | GGTCATGTCAGCA |
8-GGTCACGTGAYGS | STREME-8 | 12 | - | 108439929 | 108439941 | 8.21e-05 | 0.198 | CATCACGTGACCA |
8-GGTCACGTGAYGS | STREME-8 | X | + | 13510427 | 13510439 | 8.45e-05 | 0.203 | GGTCATGTGTCCA |
8-GGTCACGTGAYGS | STREME-8 | 6 | - | 31830514 | 31830526 | 8.63e-05 | 0.206 | GATCACGTGGGAG |
8-GGTCACGTGAYGS | STREME-8 | 13 | - | 49684176 | 49684188 | 8.89e-05 | 0.207 | CATCACGTGACCT |
8-GGTCACGTGAYGS | STREME-8 | 11 | - | 65479253 | 65479265 | 8.89e-05 | 0.207 | GGTCACGTGTATG |
8-GGTCACGTGAYGS | STREME-8 | 5 | + | 43603048 | 43603060 | 8.94e-05 | 0.207 | AGTCACGTGGCCG |
8-GGTCACGTGAYGS | STREME-8 | 1 | + | 202963939 | 202963951 | 8.94e-05 | 0.207 | GATCACTTGAGGC |
8-GGTCACGTGAYGS | STREME-8 | 8 | + | 69608111 | 69608123 | 8.98e-05 | 0.207 | GATCACCTGATCC |
8-GGTCACGTGAYGS | STREME-8 | 7 | - | 127225470 | 127225482 | 9.08e-05 | 0.208 | GCTGACGTCACTT |
8-GGTCACGTGAYGS | STREME-8 | 3 | - | 134204650 | 134204662 | 9.14e-05 | 0.208 | AGACACGTGATGC |
8-GGTCACGTGAYGS | STREME-8 | 19 | - | 23128333 | 23128345 | 9.26e-05 | 0.21 | GGACACGTTATGC |
8-GGTCACGTGAYGS | STREME-8 | 11 | + | 88153463 | 88153475 | 9.36e-05 | 0.211 | AGTCATGTGATGG |
8-GGTCACGTGAYGS | STREME-8 | 7 | - | 5085311 | 5085323 | 9.59e-05 | 0.212 | GGTGACCTGAGGA |
8-GGTCACGTGAYGS | STREME-8 | 17 | + | 72510895 | 72510907 | 9.65e-05 | 0.212 | GGTGATGTCATGT |
8-GGTCACGTGAYGS | STREME-8 | 12 | - | 132999798 | 132999810 | 9.65e-05 | 0.212 | GAGCACGTGATCC |
8-GGTCACGTGAYGS | STREME-8 | 17 | - | 25800954 | 25800966 | 9.7e-05 | 0.212 | GGTCATTTGAGGC |
8-GGTCACGTGAYGS | STREME-8 | 20 | - | 48909068 | 48909080 | 9.7e-05 | 0.212 | CGTCATGTGGCTC |
8-GGTCACGTGAYGS | STREME-8 | 3 | + | 156272910 | 156272922 | 9.95e-05 | 0.216 | AGCCACGTGACCC |
Command line:
fimo --parse-genomic-coord --verbosity 1 --oc xstreme_example_output_files/fimo_out_9 --bgfile xstreme_example_output_files/background --motif 8-GGTCACGTGAYGS xstreme_example_output_files/streme_out/streme.xml nrmix.nseqs.100.100bp.seed.1.fa
Settings:
output_directory = xstreme_example_output_files/fimo_out_9 | MEME file name = xstreme_example_output_files/streme_out/streme.xml | sequence file name = nrmix.nseqs.100.100bp.seed.1.fa |
background file name = xstreme_example_output_files/background | alphabet = DNA | max stored scores = 100000 |
allow clobber = true | compute q-values = true | parse genomic coord. = true |
text only = false | scan both strands = true | max strand = false |
threshold type = p-value | output theshold = 0.0001 | pseudocount = 0.1 |
alpha = 1 | verbosity = 1 |
This information can be useful in the event you wish to report a problem with the FIMO software.