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saveAccessors
- Static variable in class org.irisa.genouest.logol.utils.model.
Commons
saveAny
- Static variable in class org.irisa.genouest.logol.
Treatment
Decides if previous spacer must be saved
saveAs
- Variable in class org.irisa.genouest.logol.
LogolVariable
SAVECONSTRAINT
- Static variable in class org.irisa.genouest.logol.
Constants
SAVESIGN
- Static variable in class org.irisa.genouest.logol.utils.model.
Commons
scout
- Variable in class org.irisa.genouest.logol.parser.
logolParser.stringConstraints_return
scout
- Variable in class org.irisa.genouest.logol.parser.
logolParser.structConstraints_return
sendMail(Properties, String[], String, String, String)
- Static method in class org.irisa.genouest.logol.utils.
LogolUtils
Sends a mail to a list of recipents
SEPARATOR
- Static variable in class org.irisa.genouest.logol.
Constants
seqString()
- Method in class org.irisa.genouest.logol.utils.
MySequence
Sequence
- Static variable in class org.irisa.genouest.logol.parser.
logolLexer
Sequence
- Static variable in class org.irisa.genouest.logol.parser.
logolParser
SequenceAnalyser
- Class in
org.irisa.genouest.logol
SequenceDef
- Static variable in class org.irisa.genouest.logol.parser.
logolLexer
SequenceDef
- Static variable in class org.irisa.genouest.logol.parser.
logolParser
SEQUENCELength
- Static variable in class org.irisa.genouest.logol.
Constants
sequences()
- Method in class org.irisa.genouest.logol.parser.
logolParser
setContent(String)
- Method in class org.irisa.genouest.logol.utils.
MySequence
setErrFile(String)
- Static method in exception org.irisa.genouest.logol.
GrammarException
setGrammarFile(String)
- Static method in class org.irisa.genouest.logol.
Logol
setHeader(String)
- Method in class org.irisa.genouest.logol.utils.
MySequence
setInstallPath(String)
- Method in interface org.irisa.genouest.logol.dispatcher.
JobManager
setInstallPath(String)
- Method in class org.irisa.genouest.logol.dispatcher.
LocalJobManager
setInstallPath(String)
- Method in class org.irisa.genouest.logol.dispatcher.
SGEJobManager
setInterval(String)
- Method in class org.irisa.genouest.logol.
Interval
setJobArgs(String)
- Method in interface org.irisa.genouest.logol.dispatcher.
JobManager
setJobArgs(String)
- Method in class org.irisa.genouest.logol.dispatcher.
LocalJobManager
Sets the arguments for the job execution.
setJobArgs(String)
- Method in class org.irisa.genouest.logol.dispatcher.
SGEJobManager
setOutputSeqName(String)
- Static method in class org.irisa.genouest.logol.
Logol
Sets output sequence name
setParseStep(int)
- Static method in class org.irisa.genouest.logol.
Treatment
Defines current step
setPosition(long)
- Method in class org.irisa.genouest.logol.utils.
MySequence
setPredCount(int)
- Static method in class org.irisa.genouest.logol.types.
ViewVariable
setShowComments(boolean)
- Method in class org.irisa.genouest.logol.utils.model.
AbstractNode
setShowComments(boolean)
- Method in interface org.irisa.genouest.logol.utils.model.
LogolInterfaceNode
Add comments to logol generated data or not
setTerminals(HashMap<String, String>)
- Method in class org.irisa.genouest.logol.utils.model.
AbstractNode
setTerminals(HashMap<String, String>)
- Method in interface org.irisa.genouest.logol.utils.model.
LogolInterfaceNode
Sets the list of predefined terminals
setUp()
- Method in class org.irisa.genouest.logol.test.
PrologTest
setUp()
- Method in class org.irisa.genouest.logol.test.
TestView
SGEJobManager
- Class in
org.irisa.genouest.logol.dispatcher
SGEJobManager()
- Constructor for class org.irisa.genouest.logol.dispatcher.
SGEJobManager
showUsage(Options)
- Static method in class org.irisa.genouest.logol.utils.
LogolUtils
Show on output stream the usage based on a list of options
singlesOnly
- Static variable in class org.irisa.genouest.logol.
Logol
sizeAccessors
- Static variable in class org.irisa.genouest.logol.utils.model.
Commons
spacer
- Static variable in class org.irisa.genouest.logol.utils.model.
Commons
spacerAccessors
- Static variable in class org.irisa.genouest.logol.utils.model.
Commons
SpacerNode
- Class in
org.irisa.genouest.logol.utils.model
Spacer node
SpacerNode()
- Constructor for class org.irisa.genouest.logol.utils.model.
SpacerNode
splitSequence(int, int, int, int, int)
- Static method in class org.irisa.genouest.logol.utils.
LogolUtils
Split a sequence in several sub sequences according to size and number of processor
StartNode
- Class in
org.irisa.genouest.logol.utils.model
Start node e.g.
StartNode()
- Constructor for class org.irisa.genouest.logol.utils.model.
StartNode
stc_cost
- Static variable in class org.irisa.genouest.logol.utils.model.
Commons
stc_dist
- Static variable in class org.irisa.genouest.logol.utils.model.
Commons
stg_begin
- Static variable in class org.irisa.genouest.logol.utils.model.
Commons
stg_content
- Static variable in class org.irisa.genouest.logol.utils.model.
Commons
stg_end
- Static variable in class org.irisa.genouest.logol.utils.model.
Commons
stg_save
- Static variable in class org.irisa.genouest.logol.utils.model.
Commons
stg_size
- Static variable in class org.irisa.genouest.logol.utils.model.
Commons
string()
- Method in class org.irisa.genouest.logol.parser.
logolParser
stringConstraint()
- Method in class org.irisa.genouest.logol.parser.
logolParser
StringConstraint
- Class in
org.irisa.genouest.logol
StringConstraint()
- Constructor for class org.irisa.genouest.logol.
StringConstraint
stringConstraints
- Variable in class org.irisa.genouest.logol.
LogolVariable
stringConstraints()
- Method in class org.irisa.genouest.logol.parser.
logolParser
stringVariable()
- Method in class org.irisa.genouest.logol.parser.
logolParser
stringVariableElement()
- Method in class org.irisa.genouest.logol.parser.
logolParser
structConstraint()
- Method in class org.irisa.genouest.logol.parser.
logolParser
StructConstraint
- Class in
org.irisa.genouest.logol
StructConstraint()
- Constructor for class org.irisa.genouest.logol.
StructConstraint
structConstraints
- Variable in class org.irisa.genouest.logol.
LogolVariable
structConstraints()
- Method in class org.irisa.genouest.logol.parser.
logolParser
structureValue()
- Method in class org.irisa.genouest.logol.parser.
logolParser
structureValues()
- Method in class org.irisa.genouest.logol.parser.
logolParser
subList(int, int)
- Method in class org.irisa.genouest.logol.utils.
MySequence
subStr(int, int)
- Method in class org.irisa.genouest.logol.utils.
MySequence
suffixSearchPath
- Static variable in class org.irisa.genouest.logol.
Treatment
Path to suffixSearch shell
symbolAt(int)
- Method in class org.irisa.genouest.logol.utils.
MySequence
synpred25()
- Method in class org.irisa.genouest.logol.parser.
logolParser
synpred25_fragment()
- Method in class org.irisa.genouest.logol.parser.
logolParser
synpred78()
- Method in class org.irisa.genouest.logol.parser.
logolParser
synpred78_fragment()
- Method in class org.irisa.genouest.logol.parser.
logolParser
Overview
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