int PS_rna_plot ( char *string, char *structure, char *file)
int PS_rna_plot_a ( char *string, char *structure, char *file, char *pre, char *post)
int gmlRNA (char *string, char *structure, char *ssfile, char option)
int ssv_rna_plot (char *string, char *structure, char *ssfile)
int svg_rna_plot (char *string, char *structure, char *ssfile)
int xrna_plot ( char *string, char *structure, char *ssfile)
int rna_plot_type
Two low-level functions provide direct access to the graph lauyouting algorithms:
int simple_xy_coordinates ( short *pair_table, float *X, float *Y)
int naview_xy_coordinates ( short *pair_table, float *X, float *Y)
int PS_color_dot_plot ( char *string, cpair *pi, char *filename)
int PS_color_dot_plot_turn (char *seq, cpair *pi, char *filename, int winSize)
int PS_dot_plot_list (char *seq, char *filename, plist *pl, plist *mf, char *comment)
int PS_dot_plot_turn (char *seq, struct plist *pl, char *filename, int winSize)
int PS_color_aln ( const char *structure, const char *filename, const char *seqs[], const char *names[])
Several functions provide useful applications to RNA sequences
char *random_string (int l, const char symbols[])
int hamming ( const char *s1, const char *s2)
void str_DNA2RNA(char *sequence);
void str_uppercase(char *sequence);
char *pack_structure (const char *struc)
char *unpack_structure (const char *packed)
short *make_pair_table (const char *structure)
short *copy_pair_table (const short *pt)
void print_tty_input_seq (void)
void print_tty_constraint_full (void)
void print_tty_constraint (unsigned int option)
int *get_iindx (unsigned int length)
int *get_indx (unsigned int length)
void constrain_ptypes ( const char *constraint, unsigned int length, char *ptype, int *BP, int min_loop_size, unsigned int idx_type)
char *get_line(FILE *fp);
unsigned int read_record( char **header, char **sequence, char ***rest, unsigned int options);
char *time_stamp (void)
void warn_user (const char message[])
void nrerror (const char message[])
void init_rand (void)
unsigned short xsubi[3];
double urn (void)
int int_urn (int from, int to)
void *space (unsigned size)
void *xrealloc ( void *p, unsigned size)