H/Lfold.h File Reference

Predicting local MFE structures of large sequences. More...

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Functions

float Lfold (const char *string, char *structure, int maxdist)
 The local analog to fold().
float aliLfold (const char **strings, char *structure, int maxdist)
float Lfoldz (const char *string, char *structure, int maxdist, int zsc, double min_z)

Detailed Description

Predicting local MFE structures of large sequences.


Function Documentation

float Lfold ( const char *  string,
char *  structure,
int  maxdist 
)

The local analog to fold().

Computes the minimum free energy structure including only base pairs with a span smaller than 'maxdist'

Parameters:
string 
Parameters:
structure 
Parameters:
maxdist 
float aliLfold ( const char **  strings,
char *  structure,
int  maxdist 
)
Parameters:
strings 
Parameters:
structure 
Parameters:
maxdist 
Returns:
float Lfoldz ( const char *  string,
char *  structure,
int  maxdist,
int  zsc,
double  min_z 
)
Parameters:
string 
Parameters:
structure 
Parameters:
maxdist 
Parameters:
zsc 
Parameters:
min_z 
Generated on Tue May 22 15:38:07 2012 for RNAlib-2.0.4 by  doxygen 1.6.3