A Shiny web-app to clean FASTQ files with R and Bioconductor

1. Prerequisites and dependences for the direct installation of this GitHub repository

Linux users

  • Libraries OpenSSL and libcurl installed

-> Ubuntu:

Paste the following command in terminal:

Mac users

  • Command Line Tools

Type in a Terminal:

xcode-select --install

A software update popup will ask if the Command Line Tools must be installed

  • XQuartz

XQuartz can be downloaded from the following link: https://www.xquartz.org/

Windows users

  • Rtools

The program is available at https://cran.r-project.org/bin/windows/Rtools/

2. Installation

Paste the following command in the R console:

3. Launching the application

4. Description and usage

See the tutorial of the application in this link