*.BarcodeObj | Manages barcodes and samples in a BarcodeObj object |
+.BarcodeObj | Manages barcodes and samples in a BarcodeObj object |
-.BarcodeObj | Manages barcodes and samples in a BarcodeObj object |
BarcodeObj | BarcodeObj object |
BarcodeObj-class | BarcodeObj object |
BarcodeQc | Evaluates sequences quality |
BarcodeQc-class | Evaluates sequences quality |
BarcodeQcSet | Evaluates sequences quality |
BarcodeQcSet-class | Evaluates sequences quality |
bc_2df | Transforms BarcodeObj object into other data type |
bc_2df-method | Transforms BarcodeObj object into other data type |
bc_2dt | Transforms BarcodeObj object into other data type |
bc_2dt-method | Transforms BarcodeObj object into other data type |
bc_2matrix | Transforms BarcodeObj object into other data type |
bc_2matrix-method | Transforms BarcodeObj object into other data type |
bc_auto_cutoff | Finds barcode count cutoff point |
bc_auto_cutoff-method | Finds barcode count cutoff point |
bc_barcodes | Gets barcode sequences |
bc_barcodes-method | Gets barcode sequences |
bc_cleanBc | Accesses cleanBc slot in the BarcodeObj object |
bc_cleanBc-method | Accesses cleanBc slot in the BarcodeObj object |
bc_cure_cluster | Merges barcodes by editing distance |
bc_cure_cluster-method | Merges barcodes by editing distance |
bc_cure_depth | Filters barcodes by counts |
bc_cure_depth-method | Filters barcodes by counts |
bc_cure_umi | Filters UMI-barcode tag by counts |
bc_cure_umi-method | Filters UMI-barcode tag by counts |
bc_extract | Extract barcode from sequences |
bc_extract-method | Extract barcode from sequences |
bc_merge | Manages barcodes and samples in a BarcodeObj object |
bc_merge-method | Manages barcodes and samples in a BarcodeObj object |
bc_messyBc | Accesses messyBc slot in the BarcodeObj object |
bc_messyBc-method | Accesses messyBc slot in the BarcodeObj object |
bc_meta | Accesses and sets metadata in BarcodeObj object |
bc_meta-method | Accesses and sets metadata in BarcodeObj object |
bc_meta<- | Accesses and sets metadata in BarcodeObj object |
bc_meta<--method | Accesses and sets metadata in BarcodeObj object |
bc_names | Access & update sample names in BarcodeObj & and BarcodeQcSet |
bc_names-method | Access & update sample names in BarcodeObj & and BarcodeQcSet |
bc_names<- | Access & update sample names in BarcodeObj & and BarcodeQcSet |
bc_names<--method | Access & update sample names in BarcodeObj & and BarcodeQcSet |
bc_obj | A dummy BarcodeObj object |
bc_plot_mutual | Barcode read count 2D scatter plot of sample combination |
bc_plot_mutual-method | Barcode read count 2D scatter plot of sample combination |
bc_plot_pair | Barcode read count 2D scatter plot for given pairs |
bc_plot_pair-method | Barcode read count 2D scatter plot for given pairs |
bc_plot_seqQc | Evaluates sequences quality |
bc_plot_seqQc-method | Evaluates sequences quality |
bc_plot_single | Scatter plot of barcode count distribution per sample |
bc_plot_single-method | Scatter plot of barcode count distribution per sample |
bc_seq_filter | Remove low quality sequence |
bc_seq_filter-method | Remove low quality sequence |
bc_seq_qc | Evaluates sequences quality |
bc_seq_qc-method | Evaluates sequences quality |
bc_subset | Manages barcodes and samples in a BarcodeObj object |
bc_subset-method | Manages barcodes and samples in a BarcodeObj object |
bc_summary_barcode | Summary and evaluate barcode diversity |
bc_summary_barcode-method | Summary and evaluate barcode diversity |
bc_summary_seqQc | Summary barcodeQcSet |
bc_summary_seqQc-method | Summary barcodeQcSet |
CellBarcode | DNA Barcode Analysis toolkit |
format-method | Formats BarcodeObj object |
show-method | Show BarcodeObj object |
[-method | Subset the BarcodeQcSet |