BUSseq-package |
Batch Effect Correction with Unknow Subtypes for scRNA-seq data |
baseline_expression_values |
Obtain the Log-Scale Baseline Expression Levels from the Output of the 'BUSseq_MCMC' Function |
BIC_BUSseq |
Obtain BIC from the Output of the 'BUSseq_MCMC' Function |
BUSseq |
Batch Effect Correction with Unknow Subtypes for scRNA-seq data |
BUSseqfits_example |
An external example of the output of the 'BUSseq_MCMC' |
BUSseq_MCMC |
Condcut MCMC sampling and posterior inference for the BUSseq Model |
celltypes |
Obtain the Cell-type Indicators from the Output of the 'BUSseq_MCMC' Function |
celltype_effects |
Obtain the Cell-type Effects from the Output of the 'BUSseq_MCMC' Function |
celltype_mean_expression |
Obtain the Cell-Type-Specific Mean Expression Levels from the Output of the 'BUSseq_MCMC' Function |
cell_effect_values |
Obtain the cell-specific size effects from the Output of the 'BUSseq_MCMC' Function |
corrected_read_counts |
Generate the Corrected Read Count Matrix within the Output of the 'BUSseq_MCMC' |
dropout_coefficient_values |
Obtain the Coefficients of the Logistic Regression for the Dropout Events from the Output of the 'BUSseq_MCMC' Function |
heatmap_data_BUSseq |
Draw the Heatmap of the Log-scale Read Count Data for the Output of the 'BUSseq_MCMC' Function |
imputed_read_counts |
Obtain the Imputed Read Count Matrix from the Output of the 'BUSseq_MCMC' Function |
intrinsic_genes_BUSseq |
Obtain the Intrinsic Gene Indicators from the Output of the 'BUSseq_MCMC' Function |
location_batch_effects |
Obtain the Location Batch Effects from the Output of the 'BUSseq_MCMC' Function |
overdispersions |
Obtain the Overdispersion Parameters from the Output of the 'BUSseq_MCMC' Function |
raw_read_counts |
Obtain the Raw Read Count Matrix from the Output of the 'BUSseq_MCMC' Function |