Improved version of 'GRIN' software that streamlines its use in practice to analyze genomic lesion data, accelerate its computing, and expand its analysis capabilities to answer additional scientific questions including a rigorous evaluation of the association of genomic lesions with RNA expression. Pounds, Stan, et al. (2013) <doi:10.1093/bioinformatics/btt372>.
| Version: |
1.0 |
| Depends: |
R (≥ 4.2.0) |
| Imports: |
biomaRt, circlize, ComplexHeatmap, data.table, dplyr, EnsDb.Hsapiens.v75, ensembldb, forcats, GenomeInfoDb, ggplot2, graphics, grDevices, grid, gridGraphics, Gviz, magrittr, stats, stringr, survival, tibble, tidyselect, utils, writexl |
| Suggests: |
knitr, rmarkdown |
| Published: |
2024-11-19 |
| DOI: |
10.32614/CRAN.package.GRIN2 |
| Author: |
Abdelrahman Elsayed
 [aut, cre,
cph],
Xueyuan Cao [aut],
Lakshmi Anuhya patibandla [aut],
Stanley Pounds [aut, cph] |
| Maintainer: |
Abdelrahman Elsayed <aelsayed at stjude.org> |
| BugReports: |
https://github.com/abdel-elsayed87/GRIN2/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/abdel-elsayed87/GRIN2 |
| NeedsCompilation: |
no |
| CRAN checks: |
GRIN2 results |