Last updated on 2025-01-09 01:49:52 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.1 | OK | ||||
| r-devel-linux-x86_64-debian-gcc | 2.0.1 | 9.50 | 100.72 | 110.22 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.1 | 247.52 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.1 | 259.61 | ERROR | |||
| r-devel-windows-x86_64 | 2.0.1 | 14.00 | 140.00 | 154.00 | OK | |
| r-patched-linux-x86_64 | 2.0.1 | 11.64 | 136.02 | 147.66 | OK | |
| r-release-linux-x86_64 | 2.0.1 | 12.46 | 136.17 | 148.63 | OK | |
| r-release-macos-arm64 | 2.0.1 | 68.00 | OK | |||
| r-release-macos-x86_64 | 2.0.1 | 114.00 | OK | |||
| r-release-windows-x86_64 | 2.0.1 | 14.00 | 134.00 | 148.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.1 | 76.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.1 | 218.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.1 | 15.00 | 181.00 | 196.00 | OK |
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘ref-icar-vignette.Rmd’ using rmarkdown
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-1'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-2'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-3'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /data/gannet/ripley/R/packages/tests-clang/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-3-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55460 bytes
Input file size = 55610 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45499
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45499
Output IDAT size = 45499 bytes (9961 bytes decrease)
Output file size = 45577 bytes (10033 bytes = 18.04% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-4'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /data/gannet/ripley/R/packages/tests-clang/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-4-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51909 bytes
Input file size = 52059 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43151
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43151
Output IDAT size = 43151 bytes (8758 bytes decrease)
Output file size = 43229 bytes (8830 bytes = 16.96% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-5'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-6'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-7'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-8'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /data/gannet/ripley/R/packages/tests-clang/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 30588 bytes
Input file size = 31482 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28560
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 28557
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25749
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25168
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25168
Output IDAT size = 25168 bytes (5420 bytes decrease)
Output file size = 25246 bytes (6236 bytes = 19.81% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-9'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-10'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /data/gannet/ripley/R/packages/tests-clang/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-10-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52647 bytes
Input file size = 52797 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43077
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43077
Output IDAT size = 43077 bytes (9570 bytes decrease)
Output file size = 43155 bytes (9642 bytes = 18.26% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-11'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
** Processing: /data/gannet/ripley/R/packages/tests-clang/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 29088 bytes
Input file size = 29982 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27074
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24769
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24239
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24239
Output IDAT size = 24239 bytes (4849 bytes decrease)
Output file size = 24317 bytes (5665 bytes = 18.89% decrease)
Warning in eng_r(options) :
Failed to tidy R code in chunk 'unnamed-chunk-12'. Reason:
Error : The formatR package is required by the chunk option tidy = TRUE but not installed; tidy = TRUE will be ignored.
Quitting from lines 269-276 [unnamed-chunk-12] (ref-icar-vignette.Rmd)
Error: processing vignette 'ref-icar-vignette.Rmd' failed with diagnostics:
`dsn` must point to a source, not an empty string.
--- failed re-building ‘ref-icar-vignette.Rmd’
SUMMARY: processing the following file failed:
‘ref-icar-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘ref-icar-vignette.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-devel/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-3-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 55460 bytes
Input file size = 55610 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45499
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45499
Output IDAT size = 45499 bytes (9961 bytes decrease)
Output file size = 45577 bytes (10033 bytes = 18.04% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-4-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 51909 bytes
Input file size = 52059 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43151
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43151
Output IDAT size = 43151 bytes (8758 bytes decrease)
Output file size = 43229 bytes (8830 bytes = 16.96% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 30588 bytes
Input file size = 31482 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28560
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 28557
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 25749
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25168
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 25168
Output IDAT size = 25168 bytes (5420 bytes decrease)
Output file size = 25246 bytes (6236 bytes = 19.81% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-10-1.png
672x528 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52647 bytes
Input file size = 52797 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43077
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 43077
Output IDAT size = 43077 bytes (9570 bytes decrease)
Output file size = 43155 bytes (9642 bytes = 18.26% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-devel/ref.ICAR.Rcheck/vign_test/ref.ICAR/vignettes/ref-icar-vignette_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 29088 bytes
Input file size = 29982 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27074
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24769
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24239
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 24239
Output IDAT size = 24239 bytes (4849 bytes decrease)
Output file size = 24317 bytes (5665 bytes = 18.89% decrease)
Quitting from lines 269-276 [unnamed-chunk-12] (ref-icar-vignette.Rmd)
Error: processing vignette 'ref-icar-vignette.Rmd' failed with diagnostics:
`dsn` must point to a source, not an empty string.
--- failed re-building ‘ref-icar-vignette.Rmd’
SUMMARY: processing the following file failed:
‘ref-icar-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc